AutismKB 2.0

Annotation Detail for C16orf71


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Basic Information Top
Gene Symbol:C16orf71 ( DKFZp686H2240,FLJ43261 )
Gene Full Name: chromosome 16 open reading frame 71
Band: 16p13.3
Quick LinksEntrez ID:146562; OMIM: NA; Uniprot ID:CP071_HUMAN; ENSEMBL ID: ENSG00000166246; HGNC ID: 25081
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus2 / 5640123
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult12 / 19391216
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor2 / 2638457
glioma1 / 1068839
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor1 / 9635910
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal71 / 336030721
ovarian tumor1 / 7668213
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain10 / 11009899
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye1 / 2110544
heart0 / 896260 
intestine1 / 2344724
kidney2 / 2117779
larynx0 / 241450 
liver1 / 2077434
lung3 / 3369748
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis69 / 330442208
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea4 / 5241376
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 222089_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.65
Adipocyte5.9
AdrenalCortex6.55
Adrenalgland5.35
Amygdala5.85
Appendix10.6
AtrioventricularNode4.9
BDCA4+_DentriticCells6.05
Bonemarrow5.9
BronchialEpithelialCells5.8
CD105+_Endothelial5.55
CD14+_Monocytes6.3
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid7.3
CD34+7.35
CD4+_Tcells6.45
CD56+_NKCells7
CD71+_EarlyErythroid5.5
CD8+_Tcells5.5
CardiacMyocytes8.25
Caudatenucleus5.3
Cerebellum5
CerebellumPeduncles6.8
CiliaryGanglion4.5
CingulateCortex6.15
Colorectaladenocarcinoma5.85
DorsalRootGanglion4.8
FetalThyroid5.9
Fetalbrain5.8
Fetalliver5.25
Fetallung4.85
GlobusPallidus4.45
Heart8.05
Hypothalamus6.35
Kidney4.9
Leukemia_chronicMyelogenousK-5625.4
Leukemia_promyelocytic-HL-605.3
Leukemialymphoblastic(MOLT-4)4.8
Liver7.95
Lung6.45
Lymphnode5.1
Lymphoma_burkitts(Daudi)11.55
Lymphoma_burkitts(Raji)8.5
MedullaOblongata5.35
OccipitalLobe5.25
OlfactoryBulb4.65
Ovary4.3
Pancreas4.85
PancreaticIslet6.4
ParietalLobe6.4
Pituitary6.9
Placenta6
Pons5.55
PrefrontalCortex7
Prostate6.8
Salivarygland5.2
SkeletalMuscle7.65
Skin4.75
SmoothMuscle6.75
Spinalcord6.2
SubthalamicNucleus6.15
SuperiorCervicalGanglion7.1
TemporalLobe5.35
Testis18.4
TestisGermCell14.65
TestisIntersitial21.75
TestisLeydigCell17.55
TestisSeminiferousTubule27
Thalamus6.05
Thymus4.75
Thyroid7.2
Tongue8.05
Tonsil5.75
Trachea6.6
TrigeminalGanglion6.15
Uterus4.8
UterusCorpus5.45
WholeBlood6.3
Wholebrain4.75
colon5.95
pineal_day7.12
pineal_night7
retina7.075
small_intestine5.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_255_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.56 ± 0.98
Basal Forebrain2.26 ± 0.47
Basal Part of Pons1.93 ± 0.6
Cerebellar Cortex2.09 ± 0.69
Cerebellar Nuclei2.56 ± 0.53
Claustrum2.67 ± 0.9
Epithalamus2.3 ± 0.8
Frontal Lobe2.26 ± 0.75
Globus Pallidus2.58 ± 0.95
Hypothalamus2.3 ± 0.61
Insula1.81 ± 0.85
Limbic Lobe2.34 ± 0.68
Mesencephalon2.33 ± 0.69
Myelencephalon2.41 ± 0.74
Occipital Lobe2.33 ± 0.81
Parietal Lobe2.31 ± 0.74
Pontine Tegmentum2.31 ± 0.79
Striatum2.63 ± 0.8
Subthalamus1.9 ± 1.02
Temporal Lobe2.24 ± 0.77
Thalamus2.29 ± 0.74
White Matter2.58 ± 0.61
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
4930451G09RikCBCerebellum4.92
6.88
4930451G09RikCTXCerebral cortex3.25
2.42
4930451G09RikHIPHippocampal region2.83
3.09
4930451G09RikHPFHippocampal formation2.99
2.83
4930451G09RikHYHypothalamus1.34
1.02
4930451G09RikLSXLateral septal complex0.7
0.49
4930451G09RikMBMidbrain6.21
6.14
4930451G09RikMYMedulla11.43
11.23
4930451G09RikOLFOlfactory bulb4.56
4.47
4930451G09RikPPons6.21
5.92
4930451G09RikPALPallidum2.49
1.9
4930451G09RikRHPRetrohippocampal region3.34
2.45
4930451G09RiksAMYStriatum-like amygdalar nuclei1.55
1.24
4930451G09RikSTRStriatum2.71
2.02
4930451G09RikSTRdStriatum dorsal region2.93
2.35
4930451G09RikSTRvStriatum ventral region3.81
2.2
4930451G09RikTHThalamus3.38
3.05
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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