Annotation Detail for RTN4RL1
Basic Information Top
| Gene Symbol: | RTN4RL1 ( DKFZp547J144,NGRH2,NgR3 ) |
|---|---|
| Gene Full Name: | reticulon 4 receptor-like 1 |
| Band: | 17p13.3 |
| Quick Links | Entrez ID:146760; OMIM: 610461; Uniprot ID:R4RL1_HUMAN; ENSEMBL ID: ENSG00000185924; HGNC ID: 21329 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.22917
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 13 / 1939121 | 6 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 |  |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 19 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 7 / 336974 | 20 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P66481
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.88 ± 1.18 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.3 ± 0.67 | |
| Basal Part of Pons | 5.04 ± 0.36 | |
| Cerebellar Cortex | 5.97 ± 0.36 | |
| Cerebellar Nuclei | 4.78 ± 0.79 | |
| Claustrum | 5.95 ± 0.93 | |
| Epithalamus | 5.14 ± 0.79 | |
| Frontal Lobe | 6.25 ± 0.7 | |
| Globus Pallidus | 3.22 ± 1.06 | |
| Hypothalamus | 4.51 ± 0.43 | |
| Insula | 6.43 ± 0.28 | |
| Limbic Lobe | 6.37 ± 1.13 | |
| Mesencephalon | 5.29 ± 0.96 | |
| Myelencephalon | 5.6 ± 0.75 | |
| Occipital Lobe | 4.76 ± 1.28 | |
| Parietal Lobe | 5.95 ± 0.75 | |
| Pontine Tegmentum | 5.68 ± 0.9 | |
| Striatum | 3.93 ± 1.27 | |
| Subthalamus | 4.54 ± 0.75 | |
| Temporal Lobe | 6.42 ± 0.74 | |
| Thalamus | 5.81 ± 0.68 | |
| White Matter | 2.99 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rtn4rl1 | CB | Cerebellum | 46.29 |  |
| 34.99 | | |||
| Rtn4rl1 | CTX | Cerebral cortex | 99.55 | |
| 89.83 | | |||
| Rtn4rl1 | HIP | Hippocampal region | 82.17 | |
| 100 | | |||
| Rtn4rl1 | HPF | Hippocampal formation | 80.22 | |
| 100 | | |||
| Rtn4rl1 | HY | Hypothalamus | 16.78 | |
| 12.18 | | |||
| Rtn4rl1 | LSX | Lateral septal complex | 34 | |
| 24.87 | | |||
| Rtn4rl1 | MB | Midbrain | 12.44 | |
| 9.7 | | |||
| Rtn4rl1 | MY | Medulla | 12.21 | |
| 9.63 | | |||
| Rtn4rl1 | OLF | Olfactory bulb | 84.47 | |
| 69.76 | | |||
| Rtn4rl1 | P | Pons | 13.27 | |
| 10.43 | | |||
| Rtn4rl1 | PAL | Pallidum | 13.11 | |
| 8.97 | | |||
| Rtn4rl1 | RHP | Retrohippocampal region | 77.64 | |
| 73.21 | | |||
| Rtn4rl1 | sAMY | Striatum-like amygdalar nuclei | 21.2 | |
| 15.17 | | |||
| Rtn4rl1 | STR | Striatum | 43.42 | |
| 28.14 | | |||
| Rtn4rl1 | STRd | Striatum dorsal region | 43.14 | |
| 27.4 | | |||
| Rtn4rl1 | STRv | Striatum ventral region | 65.81 | |
| 40.9 | | |||
| Rtn4rl1 | TH | Thalamus | 55.42 | |
| 51.61 | |