AutismKB 2.0

Annotation Detail for CD300LG


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Basic Information Top
Gene Symbol:CD300LG ( CLM-9,CLM9,NEPMUCIN,TREM-4,TREM4 )
Gene Full Name: CD300 molecule-like family member g
Band: 17q21.31
Quick LinksEntrez ID:146894; OMIM: 610520; Uniprot ID:CLM9_HUMAN; ENSEMBL ID: ENSG00000161649; HGNC ID: 30455
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult16 / 19391218
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P38304
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.55 ± 1.13
Basal Forebrain2.16 ± 0.47
Basal Part of Pons1.9 ± 0.77
Cerebellar Cortex2.01 ± 0.83
Cerebellar Nuclei2.32 ± 0.71
Claustrum3.1 ± 0.96
Epithalamus2 ± 1.07
Frontal Lobe2.01 ± 0.79
Globus Pallidus2.75 ± 0.63
Hypothalamus2.22 ± 0.76
Insula1.97 ± 0.52
Limbic Lobe2.23 ± 0.87
Mesencephalon2.22 ± 0.79
Myelencephalon2.29 ± 0.78
Occipital Lobe2.32 ± 0.79
Parietal Lobe2.23 ± 0.87
Pontine Tegmentum2.23 ± 0.74
Striatum2.41 ± 0.7
Subthalamus2.18 ± 0.62
Temporal Lobe2.13 ± 0.83
Thalamus2.1 ± 0.67
White Matter3.03 ± 0.52
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cd300lgCBCerebellum4.61
6.89
Cd300lgCTXCerebral cortex0.73
0.97
Cd300lgHIPHippocampal region0.88
1.09
Cd300lgHPFHippocampal formation0.84
1
Cd300lgHYHypothalamus0.2
0.23
Cd300lgLSXLateral septal complex0.67
0.96
Cd300lgMBMidbrain1.15
1.9
Cd300lgMYMedulla3.89
3.9
Cd300lgOLFOlfactory bulb1.86
1.63
Cd300lgPPons1.18
1.31
Cd300lgPALPallidum0.86
1.59
Cd300lgRHPRetrohippocampal region0.8
0.91
Cd300lgsAMYStriatum-like amygdalar nuclei0.17
0.18
Cd300lgSTRStriatum0.79
0.92
Cd300lgSTRdStriatum dorsal region1
1.24
Cd300lgSTRvStriatum ventral region0.5
0.36
Cd300lgTHThalamus0.89
1.18
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00361378 16 61 76 CSGTIYAEEEGQETMK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018