Annotation Detail for RUNDC1
Basic Information Top
| Gene Symbol: | RUNDC1 ( DKFZp761H0421 ) |
|---|---|
| Gene Full Name: | RUN domain containing 1 |
| Band: | 17q21.31 |
| Quick Links | Entrez ID:146923; OMIM: NA; Uniprot ID:RUND1_HUMAN; ENSEMBL ID: ENSG00000198863; HGNC ID: 25418 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632255
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 15 / 564012 | 26 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 48 / 1939121 | 24 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 3 / 34366 | 87 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 54 / 3360307 | 16 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 5 / 125680 | 39 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 2 / 123478 | 16 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 11 / 1100989 | 9 | |
| cervix | 3 / 48171 | 62 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 3 / 336974 | 8 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 9 / 153271 | 58 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 13 / 189345 | 68 | |
| salivary gland | 2 / 20155 | 99 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 4 / 330442 | 12 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P129996
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.67 ± 0.49 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.04 ± 0.35 | |
| Basal Part of Pons | 6.18 ± 0.33 | |
| Cerebellar Cortex | 5.94 ± 0.3 | |
| Cerebellar Nuclei | 5.8 ± 0.24 | |
| Claustrum | 5.81 ± 0.56 | |
| Epithalamus | 6.09 ± 0.43 | |
| Frontal Lobe | 6.09 ± 0.35 | |
| Globus Pallidus | 5.32 ± 0.29 | |
| Hypothalamus | 6.35 ± 0.3 | |
| Insula | 6.13 ± 0.31 | |
| Limbic Lobe | 6.02 ± 0.37 | |
| Mesencephalon | 6.04 ± 0.3 | |
| Myelencephalon | 6.03 ± 0.42 | |
| Occipital Lobe | 5.84 ± 0.45 | |
| Parietal Lobe | 6.13 ± 0.29 | |
| Pontine Tegmentum | 5.98 ± 0.4 | |
| Striatum | 6.19 ± 0.35 | |
| Subthalamus | 5.92 ± 0.38 | |
| Temporal Lobe | 6.18 ± 0.35 | |
| Thalamus | 5.91 ± 0.38 | |
| White Matter | 5.24 ± 0.22 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rundc1 | CB | Cerebellum | 22.56 | |
| 27.66 | | |||
| Rundc1 | CTX | Cerebral cortex | 69.6 | |
| 51.32 | | |||
| Rundc1 | HIP | Hippocampal region | 32 | |
| 38.87 | | |||
| Rundc1 | HPF | Hippocampal formation | 35.6 | |
| 36.32 | | |||
| Rundc1 | HY | Hypothalamus | 29.27 | |
| 25.64 | | |||
| Rundc1 | LSX | Lateral septal complex | 15.15 | |
| 9.92 | | |||
| Rundc1 | MB | Midbrain | 16.18 | |
| 14.41 | | |||
| Rundc1 | MY | Medulla | 38.61 | |
| 46.42 | | |||
| Rundc1 | OLF | Olfactory bulb | 51.18 | |
| 42.35 | | |||
| Rundc1 | P | Pons | 29.76 | |
| 33.45 | | |||
| Rundc1 | PAL | Pallidum | 23.93 | |
| 20.32 | | |||
| Rundc1 | RHP | Retrohippocampal region | 41.85 | |
| 33.4 | | |||
| Rundc1 | sAMY | Striatum-like amygdalar nuclei | 44.43 | |
| 31.27 | | |||
| Rundc1 | STR | Striatum | 68.58 | |
| 49.79 | | |||
| Rundc1 | STRd | Striatum dorsal region | 77.05 | |
| 55.94 | | |||
| Rundc1 | STRv | Striatum ventral region | 72.47 | |
| 53.55 | | |||
| Rundc1 | TH | Thalamus | 26.2 | |
| 22.96 | |