Annotation Detail for TMEM199
Basic Information Top
| Gene Symbol: | TMEM199 ( C17orf32,MGC45714 ) |
|---|---|
| Gene Full Name: | transmembrane protein 199 |
| Band: | 17q11.2 |
| Quick Links | Entrez ID:147007; OMIM: NA; Uniprot ID:TM199_HUMAN; ENSEMBL ID: ENSG00000004139,ENSG00000244045; HGNC ID: 18085 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.707906
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 34 / 564012 | 60 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 69 / 1939121 | 35 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 2 / 106883 | 18 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 4 / 96359 | 41 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 140 / 3360307 | 41 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 6 / 123478 | 48 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 34 / 1100989 | 30 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 4 / 215722 | 18 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 4 / 211054 | 18 | |
| heart | 4 / 89626 | 44 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 18 / 336974 | 53 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 4 / 20539 | 194 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 11 / 280825 | 39 | |
| prostate | 12 / 189345 | 63 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 6 / 96619 | 62 | |
| testis | 6 / 330442 | 18 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P56884
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.89 ± 0.78 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.53 ± 0.19 | |
| Basal Part of Pons | 4.92 ± 0.34 | |
| Cerebellar Cortex | 4.93 ± 0.36 | |
| Cerebellar Nuclei | 4.78 ± 0.37 | |
| Claustrum | 4.62 ± 0.78 | |
| Epithalamus | 4.54 ± 0.46 | |
| Frontal Lobe | 4.71 ± 0.44 | |
| Globus Pallidus | 4.69 ± 0.64 | |
| Hypothalamus | 4.79 ± 0.48 | |
| Insula | 4.79 ± 0.38 | |
| Limbic Lobe | 4.79 ± 0.46 | |
| Mesencephalon | 4.69 ± 0.42 | |
| Myelencephalon | 4.65 ± 0.53 | |
| Occipital Lobe | 4.71 ± 0.45 | |
| Parietal Lobe | 4.69 ± 0.52 | |
| Pontine Tegmentum | 4.8 ± 0.55 | |
| Striatum | 4.56 ± 0.48 | |
| Subthalamus | 4.74 ± 0.15 | |
| Temporal Lobe | 4.74 ± 0.45 | |
| Thalamus | 4.62 ± 0.49 | |
| White Matter | 4.83 ± 0.98 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AI316787 | CB | Cerebellum | 15.6 | |
| 17.71 | | |||
| AI316787 | CTX | Cerebral cortex | 28.33 | |
| 21.18 | | |||
| AI316787 | HIP | Hippocampal region | 19.32 | |
| 19.61 | | |||
| AI316787 | HPF | Hippocampal formation | 25.55 | |
| 24.93 | | |||
| AI316787 | HY | Hypothalamus | 5.4 | |
| 4.47 | | |||
| AI316787 | LSX | Lateral septal complex | 8.15 | |
| 5.92 | | |||
| AI316787 | MB | Midbrain | 20.63 | |
| 19.4 | | |||
| AI316787 | MY | Medulla | 14.87 | |
| 17.93 | | |||
| AI316787 | OLF | Olfactory bulb | 15.78 | |
| 11.47 | | |||
| AI316787 | P | Pons | 14.7 | |
| 17.1 | | |||
| AI316787 | PAL | Pallidum | 9.33 | |
| 10.93 | | |||
| AI316787 | RHP | Retrohippocampal region | 34.02 | |
| 30.34 | | |||
| AI316787 | sAMY | Striatum-like amygdalar nuclei | 7.33 | |
| 4.87 | | |||
| AI316787 | STR | Striatum | 6.5 | |
| 4.55 | | |||
| AI316787 | STRd | Striatum dorsal region | 6.2 | |
| 4.57 | | |||
| AI316787 | STRv | Striatum ventral region | 7.25 | |
| 4.32 | | |||
| AI316787 | TH | Thalamus | 13.28 | |
| 12 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00005269 | 11 | 30 | 40 | LRAELEAALGK | Peptide Atlas |