AutismKB 2.0

Annotation Detail for TRIM16L


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:TRIM16L ( TRIM70 )
Gene Full Name: tripartite motif-containing 16-like
Band: 17p11.2
Quick LinksEntrez ID:147166; OMIM: NA; Uniprot ID:TR16L_HUMAN; ENSEMBL ID: ENSG00000108448; HGNC ID: 32670
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus5 / 5640128
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor1 / 3436629
chondrosarcoma1 / 8282312
colorectal tumor1 / 1142468
esophageal tumor28 / 172901619
gastrointestinal tumor2 / 11936916
germ cell tumor7 / 26384526
glioma6 / 10688356
head and neck tumor4 / 13630229
kidney tumor1 / 6895914
leukemia0 / 958420 
liver tumor10 / 96359103
lung tumor25 / 103127242
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal35 / 336030710
ovarian tumor0 / 766820 
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS2 / 12568015
prostate cancer2 / 10268019
retinoblastoma1 / 4635621
skin tumor1 / 1249498
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites1 / 4001524
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain26 / 110098923
cervix1 / 4817120
connective tissue3 / 14925520
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus30 / 202091484
eye4 / 21105418
heart4 / 8962644
intestine2 / 2344728
kidney3 / 21177714
larynx0 / 241450 
liver11 / 20774352
lung25 / 33697474
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas1 / 2148124
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta3 / 28082510
prostate2 / 18934510
salivary gland2 / 2015599
skin1 / 2105744
spleen0 / 539520 
stomach0 / 966190 
testis2 / 3304426
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord1 / 1368073
uterus3 / 23287812
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204341_at
Cell line Expression level Expression bar
721_B_lymphoblasts19.35
Adipocyte19.45
AdrenalCortex17.35
Adrenalgland15.4
Amygdala16.6
Appendix24.25
AtrioventricularNode28.55
BDCA4+_DentriticCells10.95
Bonemarrow18.8
BronchialEpithelialCells48.8
CD105+_Endothelial15.5
CD14+_Monocytes12.85
CD19+_BCells(neg._sel.)11.15
CD33+_Myeloid17.85
CD34+20.25
CD4+_Tcells17.45
CD56+_NKCells15.8
CD71+_EarlyErythroid17.25
CD8+_Tcells14.2
CardiacMyocytes57
Caudatenucleus14.2
Cerebellum13.05
CerebellumPeduncles18.45
CiliaryGanglion37.6
CingulateCortex16.65
Colorectaladenocarcinoma97.9
DorsalRootGanglion28.6
FetalThyroid16.75
Fetalbrain24.75
Fetalliver13.75
Fetallung18.15
GlobusPallidus11.95
Heart34.45
Hypothalamus22.3
Kidney13.15
Leukemia_chronicMyelogenousK-56213.65
Leukemia_promyelocytic-HL-6013.8
Leukemialymphoblastic(MOLT-4)13.45
Liver17.5
Lung21.55
Lymphnode14.3
Lymphoma_burkitts(Daudi)20.35
Lymphoma_burkitts(Raji)26.7
MedullaOblongata14.25
OccipitalLobe9.6
OlfactoryBulb12.65
Ovary16.1
Pancreas13.15
PancreaticIslet12.5
ParietalLobe17.1
Pituitary17.55
Placenta34.7
Pons15.55
PrefrontalCortex15.5
Prostate20.55
Salivarygland14.05
SkeletalMuscle20.5
Skin30.25
SmoothMuscle34.4
Spinalcord21.5
SubthalamicNucleus14.85
SuperiorCervicalGanglion34.55
TemporalLobe14.45
Testis14.75
TestisGermCell17.15
TestisIntersitial13.4
TestisLeydigCell17.35
TestisSeminiferousTubule14.15
Thalamus16.75
Thymus10.8
Thyroid21.05
Tongue22.2
Tonsil19.35
Trachea14.35
TrigeminalGanglion36.05
Uterus12.25
UterusCorpus15.25
WholeBlood9.8
Wholebrain11.75
colon15.3
pineal_day19.92
pineal_night18.74
retina21.175
small_intestine14.65
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_471_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.79 ± 1.02
Basal Forebrain2.71 ± 0.64
Basal Part of Pons2.53 ± 0.6
Cerebellar Cortex2.17 ± 0.63
Cerebellar Nuclei3.39 ± 0.66
Claustrum2.85 ± 0.73
Epithalamus2.53 ± 0.54
Frontal Lobe2.5 ± 0.66
Globus Pallidus3.7 ± 0.48
Hypothalamus2.74 ± 0.55
Insula2.27 ± 0.89
Limbic Lobe2.59 ± 0.71
Mesencephalon2.73 ± 0.71
Myelencephalon2.59 ± 0.68
Occipital Lobe2.69 ± 0.78
Parietal Lobe2.7 ± 0.72
Pontine Tegmentum2.82 ± 0.66
Striatum3.11 ± 0.58
Subthalamus3.01 ± 0.17
Temporal Lobe2.46 ± 0.68
Thalamus2.59 ± 0.59
White Matter3.68 ± 0.43
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00132442 17 179 195 VTNTTPWEHPYPDLPSR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved