AutismKB 2.0

Annotation Detail for CSTA


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Basic Information Top
Gene Symbol:CSTA ( STF1,STFA )
Gene Full Name: cystatin A (stefin A)
Band: 3q21.1
Quick LinksEntrez ID:1475; OMIM: 184600; Uniprot ID:CYTA_HUMAN; ENSEMBL ID: ENSG00000121552; HGNC ID: 2481
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus14 / 56401224
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult119 / 193912161
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor1 / 3436629
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor2 / 17290115
gastrointestinal tumor0 / 1193690 
germ cell tumor2 / 2638457
glioma0 / 1068830 
head and neck tumor52 / 136302381
kidney tumor0 / 689590 
leukemia2 / 9584220
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia3 / 9725030
normal73 / 336030721
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor1 / 1249498
soft tissue/muscle tissue tumor25 / 125191199
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow4 / 4880181
brain3 / 11009892
cervix1 / 4817120
connective tissue27 / 149255180
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus2 / 2020998
eye1 / 2110544
heart9 / 89626100
intestine0 / 2344720 
kidney4 / 21177718
larynx3 / 24145124
liver1 / 2077434
lung2 / 3369745
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth19 / 67052283
muscle1 / 1077159
nerve0 / 157680 
ovary1 / 1020519
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx35 / 41328846
pituitary gland2 / 16585120
placenta2 / 2808257
prostate26 / 189345137
salivary gland1 / 2015549
skin2 / 2105749
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus5 / 23287821
vascular1 / 5178019
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 204971_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.25
Adipocyte11
AdrenalCortex5.9
Adrenalgland6.2
Amygdala5.3
Appendix7
AtrioventricularNode4.55
BDCA4+_DentriticCells370.15
Bonemarrow478.2
BronchialEpithelialCells3874
CD105+_Endothelial32.25
CD14+_Monocytes2758.1
CD19+_BCells(neg._sel.)5.9
CD33+_Myeloid2616.35
CD34+198.05
CD4+_Tcells5.4
CD56+_NKCells36.3
CD71+_EarlyErythroid5.55
CD8+_Tcells4.65
CardiacMyocytes8.8
Caudatenucleus4.7
Cerebellum4.25
CerebellumPeduncles6.2
CiliaryGanglion5
CingulateCortex5.7
Colorectaladenocarcinoma5.35
DorsalRootGanglion4.3
FetalThyroid5.75
Fetalbrain5.3
Fetalliver4.6
Fetallung12.65
GlobusPallidus4.05
Heart8.8
Hypothalamus5.45
Kidney6.15
Leukemia_chronicMyelogenousK-5624.95
Leukemia_promyelocytic-HL-604.7
Leukemialymphoblastic(MOLT-4)4.1
Liver9.05
Lung105.9
Lymphnode37.8
Lymphoma_burkitts(Daudi)23.7
Lymphoma_burkitts(Raji)7.75
MedullaOblongata4.7
OccipitalLobe4.7
OlfactoryBulb5.15
Ovary14.7
Pancreas4.8
PancreaticIslet7.15
ParietalLobe6.95
Pituitary6.5
Placenta10.9
Pons7
PrefrontalCortex6.2
Prostate18.2
Salivarygland31.35
SkeletalMuscle11.45
Skin427
SmoothMuscle42.7
Spinalcord6.95
SubthalamicNucleus4.9
SuperiorCervicalGanglion6.65
TemporalLobe5.1
Testis4.5
TestisGermCell4.25
TestisIntersitial4.5
TestisLeydigCell5.6
TestisSeminiferousTubule4.45
Thalamus5.45
Thymus102.8
Thyroid7.4
Tongue12984.85
Tonsil3859.15
Trachea202.15
TrigeminalGanglion8.85
Uterus4.25
UterusCorpus7.55
WholeBlood2107.7
Wholebrain4.2
colon5.35
pineal_day6.42
pineal_night6.14
retina6.525
small_intestine5.15
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_23_P41114
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.3 ± 1.05
Basal Forebrain1.78 ± 0.19
Basal Part of Pons1.63 ± 0.72
Cerebellar Cortex1.66 ± 0.74
Cerebellar Nuclei2.03 ± 0.72
Claustrum2.7 ± 0.91
Epithalamus1.69 ± 0.76
Frontal Lobe1.63 ± 0.59
Globus Pallidus2.43 ± 0.39
Hypothalamus1.88 ± 0.71
Insula1.67 ± 0.5
Limbic Lobe1.79 ± 0.61
Mesencephalon1.95 ± 0.72
Myelencephalon1.84 ± 0.67
Occipital Lobe1.82 ± 0.59
Parietal Lobe1.85 ± 0.74
Pontine Tegmentum1.8 ± 0.63
Striatum2.02 ± 0.6
Subthalamus1.91 ± 0.61
Temporal Lobe1.72 ± 0.64
Thalamus1.78 ± 0.56
White Matter2.56 ± 0.77
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
CYTA_HUMAN_0 0 0 0 TQVVAGTNYYIK PRIDE
CYTA_HUMAN_23 8 23 30 VKPQLEEK PRIDE
CYTA_HUMAN_30 14 30 43 TNETYGKLEAVQYK PRIDE
CYTA_HUMAN_44 12 44 55 TQVVAGTNYYIK PRIDE
CYTA_HUMAN_71 18 71 88 SLPGQNEDLVLTGYQVDK PRIDE
PAp00045417 18 72 89 SLPGQNEDLVLTGYQVDK Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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