Annotation Detail for CAPN12
Basic Information Top
| Gene Symbol: | CAPN12 ( MGC20576 ) |
|---|---|
| Gene Full Name: | calpain 12 |
| Band: | 19q13.2 |
| Quick Links | Entrez ID:147968; OMIM: 608839; Uniprot ID:CAN12_HUMAN; ENSEMBL ID: ENSG00000182472; HGNC ID: 13249 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.712632
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 27 / 564012 | 47 | |
| neonate | 0 / 31097 | 0 | |
| infant | 1 / 23620 | 42 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 159 / 1939121 | 81 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 5 / 17290 | 289 |  |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 125 / 3360307 | 37 | |
| ovarian tumor | 10 / 76682 | 130 | |
| pancreatic tumor | 11 / 104616 | 105 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 53 / 102680 | 516 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 21 / 1100989 | 19 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 5 / 20209 | 247 | |
| eye | 3 / 211054 | 14 | |
| heart | 3 / 89626 | 33 | |
| intestine | 9 / 234472 | 38 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 5 / 24145 | 207 | |
| liver | 11 / 207743 | 52 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 5 / 91610 | 54 | |
| mammary gland | 8 / 153271 | 52 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 12 / 102051 | 117 | |
| pancreas | 16 / 214812 | 74 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 18 / 280825 | 64 | |
| prostate | 62 / 189345 | 327 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 7 / 96619 | 72 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: A_24_P79040
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.88 ± 1.04 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.4 ± 0.19 | |
| Basal Part of Pons | 1.6 ± 0.88 | |
| Cerebellar Cortex | 1.35 ± 0.89 | |
| Cerebellar Nuclei | 1.7 ± 0.75 | |
| Claustrum | 2.27 ± 0.87 | |
| Epithalamus | 1.17 ± 0.71 | |
| Frontal Lobe | 1.36 ± 0.65 | |
| Globus Pallidus | 1.93 ± 0.35 | |
| Hypothalamus | 1.83 ± 0.6 | |
| Insula | 1.21 ± 0.38 | |
| Limbic Lobe | 1.56 ± 0.83 | |
| Mesencephalon | 1.6 ± 0.74 | |
| Myelencephalon | 1.51 ± 0.65 | |
| Occipital Lobe | 1.28 ± 0.54 | |
| Parietal Lobe | 1.5 ± 0.85 | |
| Pontine Tegmentum | 1.33 ± 0.6 | |
| Striatum | 1.54 ± 0.55 | |
| Subthalamus | 1.56 ± 0.62 | |
| Temporal Lobe | 1.3 ± 0.51 | |
| Thalamus | 1.38 ± 0.61 | |
| White Matter | 1.81 ± 0.02 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Capn12 | CB | Cerebellum | 45.93 | |
| 55.34 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00429245 | 22 | 48 | 69 | DPYFPAGPDALGYDQLGPDSEK | Peptide Atlas |