Annotation Detail for TMEM56
Basic Information Top
| Gene Symbol: | TMEM56 ( FLJ31842,MGC102912 ) |
|---|---|
| Gene Full Name: | transmembrane protein 56 |
| Band: | 1p21.3 |
| Quick Links | Entrez ID:148534; OMIM: NA; Uniprot ID:TMM56_HUMAN; ENSEMBL ID: ENSG00000152078; HGNC ID: 26477 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.483512
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 57 / 1939121 | 29 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 68 / 3360307 | 20 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 |  |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 4 / 29757 | 134 |  |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 20 / 1100989 | 18 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 16 / 211054 | 75 | |
| heart | 2 / 89626 | 22 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 12 / 207743 | 57 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 8 / 210574 | 37 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 6 / 52413 | 114 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P19539
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.17 ± 1.08 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.75 ± 0.35 | |
| Basal Part of Pons | 1.4 ± 0.36 | |
| Cerebellar Cortex | 1.98 ± 0.6 | |
| Cerebellar Nuclei | 2.01 ± 0.7 | |
| Claustrum | 2.56 ± 0.75 | |
| Epithalamus | 1.39 ± 0.76 | |
| Frontal Lobe | 1.71 ± 0.69 | |
| Globus Pallidus | 1.75 ± 0.79 | |
| Hypothalamus | 1.78 ± 0.72 | |
| Insula | 1.51 ± 0.61 | |
| Limbic Lobe | 1.75 ± 0.66 | |
| Mesencephalon | 1.92 ± 0.78 | |
| Myelencephalon | 1.8 ± 0.69 | |
| Occipital Lobe | 1.77 ± 0.73 | |
| Parietal Lobe | 1.88 ± 0.75 | |
| Pontine Tegmentum | 1.76 ± 0.63 | |
| Striatum | 1.33 ± 0.62 | |
| Subthalamus | 1.87 ± 0.7 | |
| Temporal Lobe | 1.61 ± 0.71 | |
| Thalamus | 1.67 ± 0.62 | |
| White Matter | 2.02 ± 0.29 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tmem56 | CB | Cerebellum | 1.97 | |
| 3.35 | | |||
| Tmem56 | CTX | Cerebral cortex | 9.42 | |
| 7.32 | | |||
| Tmem56 | HIP | Hippocampal region | 7.78 | |
| 7.48 | | |||
| Tmem56 | HPF | Hippocampal formation | 7.15 | |
| 6.44 | | |||
| Tmem56 | HY | Hypothalamus | 2.25 | |
| 2.71 | | |||
| Tmem56 | LSX | Lateral septal complex | 0.73 | |
| 1.92 | | |||
| Tmem56 | MB | Midbrain | 2.32 | |
| 3.07 | | |||
| Tmem56 | MY | Medulla | 1.61 | |
| 3.15 | | |||
| Tmem56 | OLF | Olfactory bulb | 6.13 | |
| 6.85 | | |||
| Tmem56 | P | Pons | 4.04 | |
| 8.17 | | |||
| Tmem56 | PAL | Pallidum | 1.94 | |
| 1.86 | | |||
| Tmem56 | RHP | Retrohippocampal region | 4.87 | |
| 3.55 | | |||
| Tmem56 | sAMY | Striatum-like amygdalar nuclei | 4.27 | |
| 3.45 | | |||
| Tmem56 | STR | Striatum | 2.87 | |
| 2.31 | | |||
| Tmem56 | STRd | Striatum dorsal region | 1.41 | |
| 1.08 | | |||
| Tmem56 | STRv | Striatum ventral region | 7.26 | |
| 5.18 | | |||
| Tmem56 | TH | Thalamus | 31.22 | |
| 31.99 | |