Annotation Detail for PM20D1
Basic Information Top
| Gene Symbol: | PM20D1 ( Cps1,FLJ32569 ) |
|---|---|
| Gene Full Name: | peptidase M20 domain containing 1 |
| Band: | 1q32.1 |
| Quick Links | Entrez ID:148811; OMIM: NA; Uniprot ID:P20D1_HUMAN; ENSEMBL ID: ENSG00000162877; HGNC ID: 26518 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.177744
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 9 / 1939121 | 4 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 5 / 17475 | 286 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 27 / 3360307 | 8 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 6 / 211777 | 28 |  |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 0 / 336974 | 0 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 10 / 210574 | 47 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 0 / 96619 | 0 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6256_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.14 ± 0.97 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.67 ± 0.18 | |
| Basal Part of Pons | 1.44 ± 0.35 | |
| Cerebellar Cortex | 1.58 ± 0.67 | |
| Cerebellar Nuclei | 2.01 ± 0.71 | |
| Claustrum | 2.55 ± 0.86 | |
| Epithalamus | 1.55 ± 0.64 | |
| Frontal Lobe | 1.62 ± 0.7 | |
| Globus Pallidus | 2.25 ± 0.35 | |
| Hypothalamus | 1.86 ± 0.73 | |
| Insula | 1.59 ± 0.47 | |
| Limbic Lobe | 1.73 ± 0.6 | |
| Mesencephalon | 1.9 ± 0.68 | |
| Myelencephalon | 1.76 ± 0.65 | |
| Occipital Lobe | 1.73 ± 0.57 | |
| Parietal Lobe | 1.77 ± 0.69 | |
| Pontine Tegmentum | 1.82 ± 0.68 | |
| Striatum | 1.96 ± 0.61 | |
| Subthalamus | 1.89 ± 0.67 | |
| Temporal Lobe | 1.62 ± 0.53 | |
| Thalamus | 1.68 ± 0.56 | |
| White Matter | 2.22 ± 0.24 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4732466D17Rik | CB | Cerebellum | 14.93 |  |
| 16.24 | | |||
| 4732466D17Rik | CTX | Cerebral cortex | 23.56 | |
| 16.25 | | |||
| 4732466D17Rik | HIP | Hippocampal region | 19.16 | |
| 19.08 | | |||
| 4732466D17Rik | HPF | Hippocampal formation | 20.9 | |
| 18.2 | | |||
| 4732466D17Rik | HY | Hypothalamus | 10.84 | |
| 7.93 | | |||
| 4732466D17Rik | LSX | Lateral septal complex | 7.29 | |
| 5.05 | | |||
| 4732466D17Rik | MB | Midbrain | 13.27 | |
| 11.67 | | |||
| 4732466D17Rik | MY | Medulla | 17.1 | |
| 16.22 | | |||
| 4732466D17Rik | OLF | Olfactory bulb | 33.05 | |
| 27 | | |||
| 4732466D17Rik | P | Pons | 17.49 | |
| 16.35 | | |||
| 4732466D17Rik | PAL | Pallidum | 12.3 | |
| 9.73 | | |||
| 4732466D17Rik | RHP | Retrohippocampal region | 23.8 | |
| 17.24 | | |||
| 4732466D17Rik | sAMY | Striatum-like amygdalar nuclei | 11.29 | |
| 7.69 | | |||
| 4732466D17Rik | STR | Striatum | 8.27 | |
| 6.13 | | |||
| 4732466D17Rik | STRd | Striatum dorsal region | 7.27 | |
| 5.83 | | |||
| 4732466D17Rik | STRv | Striatum ventral region | 10.45 | |
| 6.61 | | |||
| 4732466D17Rik | TH | Thalamus | 17.97 | |
| 15.4 | |