Annotation Detail for RC3H1
Basic Information Top
| Gene Symbol: | RC3H1 ( KIAA2025,RNF198,ROQUIN ) |
|---|---|
| Gene Full Name: | ring finger and CCCH-type domains 1 |
| Band: | 1q25.1 |
| Quick Links | Entrez ID:149041; OMIM: 609424; Uniprot ID:RC3H1_HUMAN; ENSEMBL ID: ENSG00000135870; HGNC ID: 29434 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.30258
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 19 / 564012 | 33 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 75 / 1939121 | 38 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 7 / 136302 | 51 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 118 / 3360307 | 35 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 3 / 102680 | 29 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 4 / 123478 | 32 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 8 / 211777 | 37 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 10 / 336974 | 29 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 11 / 153271 | 71 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 10 / 107715 | 92 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 6 / 330442 | 18 | |
| thymus | 5 / 81131 | 61 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_32_P96807
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.24 ± 0.41 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.62 ± 0.22 | |
| Basal Part of Pons | 7.89 ± 0.21 | |
| Cerebellar Cortex | 8.07 ± 0.22 | |
| Cerebellar Nuclei | 7.9 ± 0.23 | |
| Claustrum | 7.23 ± 0.64 | |
| Epithalamus | 7.66 ± 0.29 | |
| Frontal Lobe | 7.77 ± 0.27 | |
| Globus Pallidus | 7.3 ± 0.17 | |
| Hypothalamus | 7.93 ± 0.29 | |
| Insula | 7.62 ± 0.28 | |
| Limbic Lobe | 7.43 ± 0.44 | |
| Mesencephalon | 7.57 ± 0.42 | |
| Myelencephalon | 7.62 ± 0.44 | |
| Occipital Lobe | 7.38 ± 0.46 | |
| Parietal Lobe | 7.67 ± 0.36 | |
| Pontine Tegmentum | 7.65 ± 0.34 | |
| Striatum | 7.14 ± 0.31 | |
| Subthalamus | 7.87 ± 0.08 | |
| Temporal Lobe | 7.67 ± 0.34 | |
| Thalamus | 7.77 ± 0.3 | |
| White Matter | 7.95 ± 0.31 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rc3h1 | CB | Cerebellum | 8.36 | |
| 9.87 | | |||
| Rc3h1 | CTX | Cerebral cortex | 5.95 | |
| 4.53 | | |||
| Rc3h1 | HIP | Hippocampal region | 9.02 | |
| 8.7 | | |||
| Rc3h1 | HPF | Hippocampal formation | 7.5 | |
| 6.62 | | |||
| Rc3h1 | HY | Hypothalamus | 1.48 | |
| 1.2 | | |||
| Rc3h1 | LSX | Lateral septal complex | 1.59 | |
| 1.07 | | |||
| Rc3h1 | MB | Midbrain | 3.15 | |
| 3.72 | | |||
| Rc3h1 | MY | Medulla | 5.14 | |
| 5.58 | | |||
| Rc3h1 | OLF | Olfactory bulb | 10.73 | |
| 7.35 | | |||
| Rc3h1 | P | Pons | 3.6 | |
| 4.32 | | |||
| Rc3h1 | PAL | Pallidum | 2.79 | |
| 2.79 | | |||
| Rc3h1 | RHP | Retrohippocampal region | 4.79 | |
| 3.6 | | |||
| Rc3h1 | sAMY | Striatum-like amygdalar nuclei | 1.71 | |
| 1.26 | | |||
| Rc3h1 | STR | Striatum | 1.76 | |
| 1.49 | | |||
| Rc3h1 | STRd | Striatum dorsal region | 1.65 | |
| 1.56 | | |||
| Rc3h1 | STRv | Striatum ventral region | 2.37 | |
| 1.58 | | |||
| Rc3h1 | TH | Thalamus | 4.43 | |
| 3.61 | |