AutismKB 2.0

Annotation Detail for CNIH3


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Basic Information Top
Gene Symbol:CNIH3 ( CNIH-3,FLJ38993 )
Gene Full Name: cornichon homolog 3 (Drosophila)
Band: 1q42.12
Quick LinksEntrez ID:149111; OMIM: NA; Uniprot ID:CNIH3_HUMAN; ENSEMBL ID: ENSG00000143786; HGNC ID: 26802
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus48 / 56401285
neonate7 / 31097225
infant0 / 236200 
juvenile0 / 555560 
adult33 / 193912117
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor2 / 11424617
esophageal tumor0 / 172900 
gastrointestinal tumor1 / 1193698
germ cell tumor15 / 26384556
glioma1 / 1068839
head and neck tumor3 / 13630222
kidney tumor3 / 6895943
leukemia0 / 958420 
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal103 / 336030730
ovarian tumor1 / 7668213
pancreatic tumor2 / 10461619
primitive neuroectodermal tumor of the CNS3 / 12568023
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor15 / 124949120
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain65 / 110098959
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye1 / 2110544
heart1 / 8962611
intestine3 / 23447212
kidney9 / 21177742
larynx0 / 241450 
liver2 / 2077439
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth3 / 6705244
muscle0 / 1077150 
nerve0 / 157680 
ovary1 / 1020519
pancreas2 / 2148129
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta1 / 2808253
prostate0 / 1893450 
salivary gland0 / 201550 
skin25 / 210574118
spleen0 / 539520 
stomach0 / 966190 
testis16 / 33044248
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 214841_at
Cell line Expression level Expression bar
721_B_lymphoblasts8.75
Adipocyte7
AdrenalCortex10.3
Adrenalgland6.3
Amygdala27.85
Appendix10.35
AtrioventricularNode8.95
BDCA4+_DentriticCells7.3
Bonemarrow8.05
BronchialEpithelialCells6.65
CD105+_Endothelial6.95
CD14+_Monocytes7.9
CD19+_BCells(neg._sel.)7.3
CD33+_Myeloid8.8
CD34+8.8
CD4+_Tcells7.65
CD56+_NKCells7.75
CD71+_EarlyErythroid7.3
CD8+_Tcells6.5
CardiacMyocytes17.8
Caudatenucleus6.45
Cerebellum5.9
CerebellumPeduncles8.6
CiliaryGanglion6.35
CingulateCortex7.7
Colorectaladenocarcinoma7.15
DorsalRootGanglion7.9
FetalThyroid7.15
Fetalbrain10.2
Fetalliver6.55
Fetallung5.1
GlobusPallidus6.8
Heart11.6
Hypothalamus7.85
Kidney6.35
Leukemia_chronicMyelogenousK-5626.35
Leukemia_promyelocytic-HL-606.35
Leukemialymphoblastic(MOLT-4)5.45
Liver12.3
Lung7.7
Lymphnode5.85
Lymphoma_burkitts(Daudi)9.5
Lymphoma_burkitts(Raji)11.3
MedullaOblongata6.25
OccipitalLobe10.05
OlfactoryBulb5.7
Ovary6.15
Pancreas6.45
PancreaticIslet8.1
ParietalLobe8.85
Pituitary8.2
Placenta6.8
Pons7.25
PrefrontalCortex10.35
Prostate8.1
Salivarygland6.4
SkeletalMuscle10.15
Skin7.7
SmoothMuscle8
Spinalcord7.6
SubthalamicNucleus8.3
SuperiorCervicalGanglion10.8
TemporalLobe7.35
Testis6.2
TestisGermCell5.65
TestisIntersitial6.6
TestisLeydigCell8.25
TestisSeminiferousTubule6.15
Thalamus7.8
Thymus5.1
Thyroid8.5
Tongue8.3
Tonsil7.4
Trachea5.85
TrigeminalGanglion9.55
Uterus5.55
UterusCorpus6.9
WholeBlood7.4
Wholebrain17.4
colon7.05
pineal_day8.88
pineal_night8.66
retina8.75
small_intestine6.75
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_2359_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.6 ± 0.44
Basal Forebrain2.96 ± 0.37
Basal Part of Pons3.03 ± 0.71
Cerebellar Cortex2.81 ± 0.71
Cerebellar Nuclei3.18 ± 0.5
Claustrum3.54 ± 0.74
Epithalamus2.49 ± 0.6
Frontal Lobe3.57 ± 0.71
Globus Pallidus3.12 ± 0.54
Hypothalamus2.96 ± 0.79
Insula2.91 ± 0.57
Limbic Lobe3.72 ± 0.6
Mesencephalon3.22 ± 0.64
Myelencephalon3.36 ± 0.79
Occipital Lobe2.9 ± 0.88
Parietal Lobe3 ± 0.75
Pontine Tegmentum3.26 ± 0.74
Striatum3.02 ± 1
Subthalamus3.42 ± 0.34
Temporal Lobe3.47 ± 0.6
Thalamus3 ± 0.77
White Matter2.5 ± 0.59
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Cnih3CBCerebellum4.53
4.26
Cnih3CTXCerebral cortex27.16
20.64
Cnih3HIPHippocampal region34.92
30.77
Cnih3HPFHippocampal formation33.82
28.79
Cnih3HYHypothalamus10.85
7.81
Cnih3LSXLateral septal complex13.65
9.36
Cnih3MBMidbrain9.88
7.6
Cnih3MYMedulla12.85
9.89
Cnih3OLFOlfactory bulb32.97
25.21
Cnih3PPons7.94
6.39
Cnih3PALPallidum3.54
2.62
Cnih3RHPRetrohippocampal region30.59
25.95
Cnih3sAMYStriatum-like amygdalar nuclei15.83
11.81
Cnih3STRStriatum7.26
4.81
Cnih3STRdStriatum dorsal region4.87
3.21
Cnih3STRvStriatum ventral region8.33
4.36
Cnih3THThalamus17.93
13.66
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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