Annotation Detail for SHISA4
Basic Information Top
| Gene Symbol: | SHISA4 ( C1orf40,FLJ18233,MGC102893,MGC129812,MGC129813,TMEM58 ) |
|---|---|
| Gene Full Name: | shisa homolog 4 (Xenopus laevis) |
| Band: | 1q32.1 |
| Quick Links | Entrez ID:149345; OMIM: NA; Uniprot ID:SHSA4_HUMAN; ENSEMBL ID: ENSG00000198892; HGNC ID: 27139 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.632471
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 61 / 1939121 | 31 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 15 / 106883 | 140 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 5 / 97250 | 51 | |
| normal | 103 / 3360307 | 30 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 3 / 33197 | 90 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 87 / 1100989 | 79 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 12 / 211054 | 56 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 8 / 336974 | 23 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 13 / 107715 | 120 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5907_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.41 ± 0.38 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.4 ± 0.21 | |
| Basal Part of Pons | 6.69 ± 0.4 | |
| Cerebellar Cortex | 6.07 ± 0.26 | |
| Cerebellar Nuclei | 6.45 ± 0.31 | |
| Claustrum | 5.88 ± 0.62 | |
| Epithalamus | 5.93 ± 0.65 | |
| Frontal Lobe | 6.49 ± 0.43 | |
| Globus Pallidus | 6.9 ± 0.35 | |
| Hypothalamus | 6.22 ± 0.45 | |
| Insula | 6.37 ± 0.29 | |
| Limbic Lobe | 6.22 ± 0.38 | |
| Mesencephalon | 6.33 ± 0.39 | |
| Myelencephalon | 6.43 ± 0.45 | |
| Occipital Lobe | 6.07 ± 0.35 | |
| Parietal Lobe | 6.39 ± 0.38 | |
| Pontine Tegmentum | 6.31 ± 0.34 | |
| Striatum | 6.31 ± 0.3 | |
| Subthalamus | 5.89 ± 0.87 | |
| Temporal Lobe | 6.52 ± 0.39 | |
| Thalamus | 6.64 ± 0.34 | |
| White Matter | 7.12 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Tmem58 | CB | Cerebellum | 1.03 | |
| 1.28 | | |||
| Tmem58 | CTX | Cerebral cortex | 6.33 | |
| 6.1 | | |||
| Tmem58 | HIP | Hippocampal region | 3.3 | |
| 3.68 | | |||
| Tmem58 | HPF | Hippocampal formation | 3.81 | |
| 3.96 | | |||
| Tmem58 | HY | Hypothalamus | 2.18 | |
| 2.96 | | |||
| Tmem58 | LSX | Lateral septal complex | 0.54 | |
| 0.81 | | |||
| Tmem58 | MB | Midbrain | 0.6 | |
| 0.8 | | |||
| Tmem58 | MY | Medulla | 1.74 | |
| 2.72 | | |||
| Tmem58 | OLF | Olfactory bulb | 5.04 | |
| 5.62 | | |||
| Tmem58 | P | Pons | 1.3 | |
| 2.01 | | |||
| Tmem58 | PAL | Pallidum | 0.44 | |
| 0.43 | | |||
| Tmem58 | RHP | Retrohippocampal region | 4.79 | |
| 4.45 | | |||
| Tmem58 | sAMY | Striatum-like amygdalar nuclei | 0.7 | |
| 0.92 | | |||
| Tmem58 | STR | Striatum | 0.66 | |
| 0.64 | | |||
| Tmem58 | STRd | Striatum dorsal region | 0.77 | |
| 0.72 | | |||
| Tmem58 | STRv | Striatum ventral region | 0.38 | |
| 0.29 | | |||
| Tmem58 | TH | Thalamus | 0.8 | |
| 0.78 | |