Annotation Detail for C22orf40
Basic Information Top
| Gene Symbol: | C22orf40 ( - ) |
|---|---|
| Gene Full Name: | chromosome 22 open reading frame 40 |
| Band: | 22q13.31 |
| Quick Links | Entrez ID:150383; OMIM: NA; Uniprot ID:CV040_HUMAN; ENSEMBL ID: ENSG00000205643; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.592209
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 16 / 263845 | 60 |  |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 11 / 95842 | 114 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 43 / 3360307 | 12 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 10 / 125680 | 79 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 0 / 29757 | 0 | |
| blood | 13 / 123478 | 105 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 19 / 1100989 | 17 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 2 / 89626 | 22 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 8 / 336974 | 23 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 12 / 102051 | 117 | |
| pancreas | 3 / 214812 | 13 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 5 / 280825 | 17 | |
| prostate | 2 / 189345 | 10 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 1 / 330442 | 3 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P478726
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.56 ± 0.19 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.39 ± 0.21 | |
| Basal Part of Pons | 7.77 ± 0.2 | |
| Cerebellar Cortex | 7.76 ± 0.11 | |
| Cerebellar Nuclei | 7.69 ± 0.22 | |
| Claustrum | 7.33 ± 0.33 | |
| Epithalamus | 7.54 ± 0.32 | |
| Frontal Lobe | 7.52 ± 0.25 | |
| Globus Pallidus | 7.68 ± 0.16 | |
| Hypothalamus | 7.42 ± 0.25 | |
| Insula | 7.62 ± 0.24 | |
| Limbic Lobe | 7.51 ± 0.19 | |
| Mesencephalon | 7.44 ± 0.27 | |
| Myelencephalon | 7.56 ± 0.27 | |
| Occipital Lobe | 7.62 ± 0.31 | |
| Parietal Lobe | 7.47 ± 0.22 | |
| Pontine Tegmentum | 7.46 ± 0.22 | |
| Striatum | 7.27 ± 0.28 | |
| Subthalamus | 7.55 ± 0.14 | |
| Temporal Lobe | 7.57 ± 0.23 | |
| Thalamus | 7.61 ± 0.24 | |
| White Matter | 8.13 ± 0.14 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2210021J22Rik | CB | Cerebellum | 1.1 | |
| 2.43 | | |||
| 2210021J22Rik | CTX | Cerebral cortex | 30.69 | |
| 22.59 | | |||
| 2210021J22Rik | HIP | Hippocampal region | 17.5 | |
| 19.28 | | |||
| 2210021J22Rik | HPF | Hippocampal formation | 12.54 | |
| 12.75 | | |||
| 2210021J22Rik | HY | Hypothalamus | 3.01 | |
| 2.19 | | |||
| 2210021J22Rik | LSX | Lateral septal complex | 4.17 | |
| 3.24 | | |||
| 2210021J22Rik | MB | Midbrain | 0.91 | |
| 1.5 | | |||
| 2210021J22Rik | MY | Medulla | 0.02 | |
| 0.02 | | |||
| 2210021J22Rik | OLF | Olfactory bulb | 14.21 | |
| 11.69 | | |||
| 2210021J22Rik | P | Pons | 0.29 | |
| 0.65 | | |||
| 2210021J22Rik | PAL | Pallidum | 5.01 | |
| 4.08 | | |||
| 2210021J22Rik | RHP | Retrohippocampal region | 4.71 | |
| 4.16 | | |||
| 2210021J22Rik | sAMY | Striatum-like amygdalar nuclei | 5.16 | |
| 3.43 | | |||
| 2210021J22Rik | STR | Striatum | 12.71 | |
| 8.74 | | |||
| 2210021J22Rik | STRd | Striatum dorsal region | 17.08 | |
| 11.99 | | |||
| 2210021J22Rik | STRv | Striatum ventral region | 6.06 | |
| 3.76 | | |||
| 2210021J22Rik | TH | Thalamus | 10.47 | |
| 8.18 | |