Annotation Detail for PROM2
Basic Information Top
| Gene Symbol: | PROM2 ( MGC138714,PROML2 ) |
|---|---|
| Gene Full Name: | prominin 2 |
| Band: | 2q11.1 |
| Quick Links | Entrez ID:150696; OMIM: NA; Uniprot ID:PROM2_HUMAN; ENSEMBL ID: ENSG00000155066; HGNC ID: 20685 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.469313
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 3 / 564012 | 5 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 30 / 1939121 | 15 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 6 / 114246 | 52 |  |
| esophageal tumor | 4 / 17290 | 231 |  |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 14 / 136302 | 102 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 19 / 3360307 | 5 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 4 / 20209 | 197 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 12 / 234472 | 51 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 4 / 24145 | 165 | |
| liver | 0 / 207743 | 0 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 2 / 96619 | 20 | |
| testis | 2 / 330442 | 6 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11446_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.95 ± 0.92 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.01 ± 0.27 | |
| Basal Part of Pons | 3.23 ± 0.72 | |
| Cerebellar Cortex | 3.42 ± 0.71 | |
| Cerebellar Nuclei | 3.65 ± 0.49 | |
| Claustrum | 4.24 ± 0.8 | |
| Epithalamus | 3.41 ± 0.45 | |
| Frontal Lobe | 3.46 ± 0.76 | |
| Globus Pallidus | 4.08 ± 0.61 | |
| Hypothalamus | 3.27 ± 0.54 | |
| Insula | 2.94 ± 0.98 | |
| Limbic Lobe | 3.54 ± 0.76 | |
| Mesencephalon | 3.73 ± 1.05 | |
| Myelencephalon | 3.6 ± 0.73 | |
| Occipital Lobe | 3.8 ± 0.65 | |
| Parietal Lobe | 3.62 ± 0.65 | |
| Pontine Tegmentum | 3.57 ± 0.72 | |
| Striatum | 3.84 ± 0.74 | |
| Subthalamus | 3.59 ± 0.57 | |
| Temporal Lobe | 3.41 ± 0.78 | |
| Thalamus | 3.55 ± 0.71 | |
| White Matter | 4.65 ± 0.38 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Prom2 | CB | Cerebellum | 6.19 | |
| 6.31 | | |||
| Prom2 | CTX | Cerebral cortex | 9.62 | |
| 6.47 | | |||
| Prom2 | HIP | Hippocampal region | 6.18 | |
| 5.99 | | |||
| Prom2 | HPF | Hippocampal formation | 5.71 | |
| 4.81 | | |||
| Prom2 | HY | Hypothalamus | 3.16 | |
| 2.25 | | |||
| Prom2 | LSX | Lateral septal complex | 5.74 | |
| 3.92 | | |||
| Prom2 | MB | Midbrain | 5.34 | |
| 4.93 | | |||
| Prom2 | MY | Medulla | 7.32 | |
| 7.04 | | |||
| Prom2 | OLF | Olfactory bulb | 8.12 | |
| 5.49 | | |||
| Prom2 | P | Pons | 6.09 | |
| 6.18 | | |||
| Prom2 | PAL | Pallidum | 3.52 | |
| 2.57 | | |||
| Prom2 | RHP | Retrohippocampal region | 4.67 | |
| 3.12 | | |||
| Prom2 | sAMY | Striatum-like amygdalar nuclei | 1.96 | |
| 1.17 | | |||
| Prom2 | STR | Striatum | 3.15 | |
| 1.95 | | |||
| Prom2 | STRd | Striatum dorsal region | 2.5 | |
| 1.58 | | |||
| Prom2 | STRv | Striatum ventral region | 4.37 | |
| 2.43 | | |||
| Prom2 | TH | Thalamus | 10.27 | |
| 8.52 | |