Annotation Detail for FAM117B
Basic Information Top
| Gene Symbol: | FAM117B ( ALS2CR13,DKFZp686H01244,FLJ38771 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 117, member B |
| Band: | 2q33.2 |
| Quick Links | Entrez ID:150864; OMIM: NA; Uniprot ID:F117B_HUMAN; ENSEMBL ID: ENSG00000138439; HGNC ID: 14440 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.471130
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 17 / 564012 | 30 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 31 / 1939121 | 15 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 | |
| germ cell tumor | 6 / 263845 | 22 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 47 / 3360307 | 13 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 1 / 89626 | 11 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 2 / 24145 | 82 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 5 / 102051 | 48 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 1 / 96619 | 10 | |
| testis | 8 / 330442 | 24 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_32_P195401
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.63 ± 0.27 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.59 ± 0.08 | |
| Basal Part of Pons | 8.5 ± 0.29 | |
| Cerebellar Cortex | 8.77 ± 0.14 | |
| Cerebellar Nuclei | 8.21 ± 0.12 | |
| Claustrum | 8.75 ± 0.25 | |
| Epithalamus | 8.5 ± 0.32 | |
| Frontal Lobe | 8.51 ± 0.27 | |
| Globus Pallidus | 7.43 ± 0.32 | |
| Hypothalamus | 8.98 ± 0.41 | |
| Insula | 8.77 ± 0.32 | |
| Limbic Lobe | 8.44 ± 0.4 | |
| Mesencephalon | 8.51 ± 0.4 | |
| Myelencephalon | 8.53 ± 0.36 | |
| Occipital Lobe | 8.47 ± 0.39 | |
| Parietal Lobe | 8.58 ± 0.31 | |
| Pontine Tegmentum | 8.52 ± 0.39 | |
| Striatum | 8.3 ± 0.41 | |
| Subthalamus | 8.66 ± 0.21 | |
| Temporal Lobe | 8.68 ± 0.24 | |
| Thalamus | 8.35 ± 0.3 | |
| White Matter | 7.73 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Als2cr13 | CB | Cerebellum | 26.83 | |
| 28.92 | | |||
| Als2cr13 | CTX | Cerebral cortex | 74.88 | |
| 58.69 | | |||
| Als2cr13 | HIP | Hippocampal region | 47.8 | |
| 75.44 | | |||
| Als2cr13 | HPF | Hippocampal formation | 46.55 | |
| 57.76 | | |||
| Als2cr13 | HY | Hypothalamus | 30.56 | |
| 25.38 | | |||
| Als2cr13 | LSX | Lateral septal complex | 53.83 | |
| 39.14 | | |||
| Als2cr13 | MB | Midbrain | 28.29 | |
| 24.15 | | |||
| Als2cr13 | MY | Medulla | 18.94 | |
| 18.2 | | |||
| Als2cr13 | OLF | Olfactory bulb | 38.35 | |
| 30.03 | | |||
| Als2cr13 | P | Pons | 17.04 | |
| 16.56 | | |||
| Als2cr13 | PAL | Pallidum | 26.74 | |
| 22.92 | | |||
| Als2cr13 | RHP | Retrohippocampal region | 45.28 | |
| 34.27 | | |||
| Als2cr13 | sAMY | Striatum-like amygdalar nuclei | 22.44 | |
| 16.29 | | |||
| Als2cr13 | STR | Striatum | 32.05 | |
| 23.06 | | |||
| Als2cr13 | STRd | Striatum dorsal region | 27.17 | |
| 19.62 | | |||
| Als2cr13 | STRv | Striatum ventral region | 46.83 | |
| 32.19 | | |||
| Als2cr13 | TH | Thalamus | 34.15 | |
| 30.41 | |