Annotation Detail for FAM84A
Basic Information Top
| Gene Symbol: | FAM84A ( FLJ35392,NSE1,PP11517 ) |
|---|---|
| Gene Full Name: | family with sequence similarity 84, member A |
| Band: | 2p24.3 |
| Quick Links | Entrez ID:151354; OMIM: 611234; Uniprot ID:FA84A_HUMAN; ENSEMBL ID: ENSG00000162981; HGNC ID: 20743 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.260855
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 29 / 564012 | 51 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 8 / 23620 | 338 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 83 / 1939121 | 42 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 8 / 106883 | 74 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 1 / 95842 | 10 |  |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 114 / 3360307 | 33 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 16 / 125680 | 127 | |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 78 / 1100989 | 70 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 10 / 89626 | 111 | |
| intestine | 39 / 234472 | 166 | |
| kidney | 6 / 211777 | 28 | |
| larynx | 1 / 24145 | 41 | |
| liver | 2 / 207743 | 9 | |
| lung | 12 / 336974 | 35 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 4 / 102051 | 39 | |
| pancreas | 4 / 214812 | 18 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 14 / 280825 | 49 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P306215
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.98 ± 0.64 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 5.62 ± 0.73 | |
| Basal Part of Pons | 5.26 ± 0.51 | |
| Cerebellar Cortex | 5.05 ± 0.3 | |
| Cerebellar Nuclei | 5.84 ± 0.52 | |
| Claustrum | 5.41 ± 0.66 | |
| Epithalamus | 4.9 ± 0.6 | |
| Frontal Lobe | 5.81 ± 0.56 | |
| Globus Pallidus | 4.8 ± 0.92 | |
| Hypothalamus | 5.32 ± 0.83 | |
| Insula | 5.74 ± 0.22 | |
| Limbic Lobe | 5.65 ± 0.66 | |
| Mesencephalon | 5.28 ± 0.55 | |
| Myelencephalon | 5.62 ± 0.64 | |
| Occipital Lobe | 5.65 ± 0.7 | |
| Parietal Lobe | 5.83 ± 0.56 | |
| Pontine Tegmentum | 5.76 ± 0.66 | |
| Striatum | 5.56 ± 0.73 | |
| Subthalamus | 5.82 ± 0.46 | |
| Temporal Lobe | 5.85 ± 0.48 | |
| Thalamus | 5.37 ± 0.58 | |
| White Matter | 4.19 ± 0.49 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| AW125753 | CB | Cerebellum | 29.88 | |
| 22.86 | | |||
| AW125753 | CTX | Cerebral cortex | 80.72 | |
| 86.02 | | |||
| AW125753 | HIP | Hippocampal region | 97.11 | |
| 100 | | |||
| AW125753 | HPF | Hippocampal formation | 84.84 | |
| 100 | | |||
| AW125753 | HY | Hypothalamus | 29.42 | |
| 17.81 | | |||
| AW125753 | LSX | Lateral septal complex | 89.34 | |
| 84.18 | | |||
| AW125753 | MB | Midbrain | 35.74 | |
| 25.94 | | |||
| AW125753 | MY | Medulla | 18.75 | |
| 13.4 | | |||
| AW125753 | OLF | Olfactory bulb | 84.14 | |
| 83.29 | | |||
| AW125753 | P | Pons | 17.23 | |
| 13.03 | | |||
| AW125753 | PAL | Pallidum | 51.32 | |
| 40.77 | | |||
| AW125753 | RHP | Retrohippocampal region | 64.79 | |
| 61.62 | | |||
| AW125753 | sAMY | Striatum-like amygdalar nuclei | 66.81 | |
| 46.77 | | |||
| AW125753 | STR | Striatum | 69.35 | |
| 53.37 | | |||
| AW125753 | STRd | Striatum dorsal region | 64.15 | |
| 43.87 | | |||
| AW125753 | STRv | Striatum ventral region | 78.89 | |
| 69.96 | | |||
| AW125753 | TH | Thalamus | 25.99 | |
| 19.32 | |