AutismKB 2.0

Annotation Detail for RNF38


View Evidences View Variants View Annotations
Basic Information Top
Gene Symbol:RNF38 ( FLJ21343 )
Gene Full Name: ring finger protein 38
Band: 9p13.2
Quick LinksEntrez ID:152006; OMIM: 612488; Uniprot ID:RNF38_HUMAN; ENSEMBL ID: ENSG00000137075; HGNC ID: 18052
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body4 / 7076156
blastocyst3 / 6231948
fetus45 / 56401279
neonate1 / 3109732
infant2 / 2362084
juvenile2 / 5555635
adult104 / 193912153
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor2 / 9417821
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor2 / 11424617
esophageal tumor1 / 1729057
gastrointestinal tumor6 / 11936950
germ cell tumor21 / 26384579
glioma3 / 10688328
head and neck tumor17 / 136302124
kidney tumor2 / 6895929
leukemia5 / 9584252
liver tumor5 / 9635951
lung tumor1 / 1031279
lymphoma1 / 7175513
non-neoplasia2 / 9725020
normal206 / 336030761
ovarian tumor3 / 7668239
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS4 / 12568031
prostate cancer2 / 10268019
retinoblastoma2 / 4635643
skin tumor1 / 1249498
soft tissue/muscle tissue tumor5 / 12519139
uterine tumor4 / 9025744
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites5 / 40015124
bladder1 / 2975733
blood4 / 12347832
bone1 / 7165513
bone marrow1 / 4880120
brain66 / 110098959
cervix0 / 481710 
connective tissue5 / 14925533
ear0 / 162120 
embryonic tissue9 / 21572241
esophagus1 / 2020949
eye16 / 21105475
heart3 / 8962633
intestine6 / 23447225
kidney10 / 21177747
larynx1 / 2414541
liver5 / 20774324
lung6 / 33697417
lymph1 / 4427022
lymph node3 / 9161032
mammary gland2 / 15327113
mouth2 / 6705229
muscle3 / 10771527
nerve1 / 1576863
ovary3 / 10205129
pancreas1 / 2148124
parathyroid1 / 2053948
pharynx1 / 4132824
pituitary gland1 / 1658560
placenta23 / 28082581
prostate9 / 18934547
salivary gland0 / 201550 
skin4 / 21057418
spleen3 / 5395255
stomach1 / 9661910
testis72 / 330442217
thymus5 / 8113161
thyroid15 / 47473315
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord1 / 1368073
uterus16 / 23287868
vascular3 / 5178057
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 218528_s_at
Cell line Expression level Expression bar
721_B_lymphoblasts30.5
Adipocyte12.4
AdrenalCortex10.45
Adrenalgland14.45
Amygdala38.8
Appendix15.1
AtrioventricularNode11.45
BDCA4+_DentriticCells61.6
Bonemarrow15.4
BronchialEpithelialCells10.25
CD105+_Endothelial33.35
CD14+_Monocytes31.4
CD19+_BCells(neg._sel.)52.6
CD33+_Myeloid55.35
CD34+23.6
CD4+_Tcells68.55
CD56+_NKCells69.85
CD71+_EarlyErythroid57.5
CD8+_Tcells84.45
CardiacMyocytes16.15
Caudatenucleus12.25
Cerebellum38.15
CerebellumPeduncles18.5
CiliaryGanglion10.1
CingulateCortex14.25
Colorectaladenocarcinoma11.5
DorsalRootGanglion9.8
FetalThyroid12.6
Fetalbrain68.15
Fetalliver12.5
Fetallung15.2
GlobusPallidus9.3
Heart16
Hypothalamus22.9
Kidney13.95
Leukemia_chronicMyelogenousK-5628.6
Leukemia_promyelocytic-HL-6012.45
Leukemialymphoblastic(MOLT-4)11
Liver16
Lung20.35
Lymphnode17.85
Lymphoma_burkitts(Daudi)18.55
Lymphoma_burkitts(Raji)16.3
MedullaOblongata12.6
OccipitalLobe17.55
OlfactoryBulb12.15
Ovary10.4
Pancreas9.2
PancreaticIslet13.65
ParietalLobe14.3
Pituitary14.85
Placenta61.7
Pons12.35
PrefrontalCortex84.95
Prostate19.2
Salivarygland19.05
SkeletalMuscle13.4
Skin9.9
SmoothMuscle11.8
Spinalcord16.2
SubthalamicNucleus15.25
SuperiorCervicalGanglion23.65
TemporalLobe12
Testis29.9
TestisGermCell51.5
TestisIntersitial19.4
TestisLeydigCell14.6
TestisSeminiferousTubule25.25
Thalamus14.75
Thymus21.6
Thyroid39.85
Tongue12.85
Tonsil13.1
Trachea14.2
TrigeminalGanglion17.35
Uterus59.8
UterusCorpus14.65
WholeBlood90.5
Wholebrain23.35
colon37.6
pineal_day43.34
pineal_night39.54
retina79.275
small_intestine53.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P4334
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala5.92 ± 0.64
Basal Forebrain5.55 ± 0.54
Basal Part of Pons5.59 ± 0.44
Cerebellar Cortex5.96 ± 0.31
Cerebellar Nuclei5.6 ± 0.55
Claustrum6.1 ± 0.69
Epithalamus5.67 ± 0.4
Frontal Lobe5.55 ± 0.47
Globus Pallidus5.47 ± 0.46
Hypothalamus5.58 ± 0.35
Insula5.63 ± 0.51
Limbic Lobe5.72 ± 0.49
Mesencephalon5.74 ± 0.65
Myelencephalon5.65 ± 0.51
Occipital Lobe5.76 ± 0.39
Parietal Lobe5.72 ± 0.45
Pontine Tegmentum5.71 ± 0.52
Striatum5.32 ± 0.46
Subthalamus5.96 ± 0.61
Temporal Lobe5.6 ± 0.43
Thalamus5.62 ± 0.43
White Matter5.92 ± 0.28
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Rnf38CBCerebellum3.59
4.47
Rnf38CTXCerebral cortex17.32
11.01
Rnf38HIPHippocampal region8.95
7.86
Rnf38HPFHippocampal formation7.36
6.02
Rnf38HYHypothalamus2.56
3.08
Rnf38LSXLateral septal complex1.82
1.39
Rnf38MBMidbrain5.75
6.36
Rnf38MYMedulla7.51
6.72
Rnf38OLFOlfactory bulb10.74
7.2
Rnf38PPons4.92
5.91
Rnf38PALPallidum6.83
5.54
Rnf38RHPRetrohippocampal region4.53
3.34
Rnf38sAMYStriatum-like amygdalar nuclei2.9
1.78
Rnf38STRStriatum4.46
3.95
Rnf38STRdStriatum dorsal region3.94
3.69
Rnf38STRvStriatum ventral region7.6
6.15
Rnf38THThalamus2.68
2.05
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


Copyright © 2017, Center for Bioinformatics , Peking University | All Rights Reserved