Annotation Detail for CCDC50
Basic Information Top
| Gene Symbol: | CCDC50 ( C3orf6,DFNA44,YMER ) |
|---|---|
| Gene Full Name: | coiled-coil domain containing 50 |
| Band: | 3q28 |
| Quick Links | Entrez ID:152137; OMIM: 611051; Uniprot ID:CCD50_HUMAN; ENSEMBL ID: ENSG00000152492; HGNC ID: 18111 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.478682
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 7 / 70761 | 98 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 58 / 564012 | 102 | |
| neonate | 0 / 31097 | 0 | |
| infant | 3 / 23620 | 127 | |
| juvenile | 2 / 55556 | 35 |  |
| adult | 166 / 1939121 | 85 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 21 / 94178 | 222 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 9 / 82823 | 108 | |
| colorectal tumor | 14 / 114246 | 122 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 10 / 119369 | 83 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 5 / 106883 | 46 | |
| head and neck tumor | 21 / 136302 | 154 | |
| kidney tumor | 10 / 68959 | 145 | |
| leukemia | 7 / 95842 | 73 | |
| liver tumor | 13 / 96359 | 134 | |
| lung tumor | 3 / 103127 | 29 | |
| lymphoma | 4 / 71755 | 55 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 209 / 3360307 | 62 | |
| ovarian tumor | 4 / 76682 | 52 | |
| pancreatic tumor | 11 / 104616 | 105 | |
| primitive neuroectodermal tumor of the CNS | 17 / 125680 | 135 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 2 / 46356 | 43 | |
| skin tumor | 14 / 124949 | 112 | |
| soft tissue/muscle tissue tumor | 11 / 125191 | 87 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 4 / 13106 | 305 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 5 / 29757 | 168 | |
| blood | 4 / 123478 | 32 | |
| bone | 4 / 71655 | 55 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 60 / 1100989 | 54 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 16 / 149255 | 107 | |
| ear | 4 / 16212 | 246 | |
| embryonic tissue | 9 / 215722 | 41 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 3 / 89626 | 33 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 25 / 211777 | 118 | |
| larynx | 0 / 24145 | 0 | |
| liver | 18 / 207743 | 86 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 11 / 91610 | 120 | |
| mammary gland | 25 / 153271 | 163 | |
| mouth | 12 / 67052 | 178 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 7 / 102051 | 68 | |
| pancreas | 14 / 214812 | 65 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 7 / 41328 | 169 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 27 / 280825 | 96 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 22 / 210574 | 104 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 10 / 96619 | 103 | |
| testis | 8 / 330442 | 24 | |
| thymus | 4 / 81131 | 49 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_24_P51786
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.85 ± 0.35 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 10 ± 0.4 | |
| Basal Part of Pons | 9.6 ± 0.27 | |
| Cerebellar Cortex | 9.57 ± 0.19 | |
| Cerebellar Nuclei | 10.12 ± 0.32 | |
| Claustrum | 9.91 ± 0.31 | |
| Epithalamus | 9.81 ± 0.25 | |
| Frontal Lobe | 9.6 ± 0.38 | |
| Globus Pallidus | 11.1 ± 0.28 | |
| Hypothalamus | 9.98 ± 0.27 | |
| Insula | 9.64 ± 0.29 | |
| Limbic Lobe | 9.66 ± 0.55 | |
| Mesencephalon | 10.02 ± 0.31 | |
| Myelencephalon | 9.87 ± 0.34 | |
| Occipital Lobe | 10.04 ± 0.46 | |
| Parietal Lobe | 9.76 ± 0.39 | |
| Pontine Tegmentum | 9.84 ± 0.36 | |
| Striatum | 9.97 ± 0.43 | |
| Subthalamus | 9.9 ± 0.2 | |
| Temporal Lobe | 9.71 ± 0.33 | |
| Thalamus | 10.02 ± 0.25 | |
| White Matter | 10.9 ± 0.52 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ccdc50 | CB | Cerebellum | 26.72 | |
| 83.23 | | |||
| Ccdc50 | CTX | Cerebral cortex | 85.13 | |
| 64.05 | | |||
| Ccdc50 | HIP | Hippocampal region | 47.68 | |
| 59.19 | | |||
| Ccdc50 | HPF | Hippocampal formation | 52.77 | |
| 54.8 | | |||
| Ccdc50 | HY | Hypothalamus | 72.76 | |
| 59.42 | | |||
| Ccdc50 | LSX | Lateral septal complex | 49.68 | |
| 35.71 | | |||
| Ccdc50 | MB | Midbrain | 62.66 | |
| 56.25 | | |||
| Ccdc50 | MY | Medulla | 67.51 | |
| 71.54 | | |||
| Ccdc50 | OLF | Olfactory bulb | 84.55 | |
| 72.01 | | |||
| Ccdc50 | P | Pons | 60.97 | |
| 61.93 | | |||
| Ccdc50 | PAL | Pallidum | 72.53 | |
| 68.2 | | |||
| Ccdc50 | RHP | Retrohippocampal region | 64.61 | |
| 50.47 | | |||
| Ccdc50 | sAMY | Striatum-like amygdalar nuclei | 65.25 | |
| 53.12 | | |||
| Ccdc50 | STR | Striatum | 38.85 | |
| 29.68 | | |||
| Ccdc50 | STRd | Striatum dorsal region | 31.05 | |
| 24.57 | | |||
| Ccdc50 | STRv | Striatum ventral region | 47.1 | |
| 31.67 | | |||
| Ccdc50 | TH | Thalamus | 89.14 | |
| 78.89 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| CCD50_HUMAN_2 | 18 | 2 | 19 | AEVSIDQSKLPGVKEVCR | PRIDE |
| PAp00039150 | 18 | 77 | 94 | YKDLEQQDCEIAQEIQEK | Peptide Atlas |