Annotation Detail for FGD5
Basic Information Top
| Gene Symbol: | FGD5 ( ZFYVE23 ) |
|---|---|
| Gene Full Name: | FYVE, RhoGEF and PH domain containing 5 |
| Band: | 3p25.1 |
| Quick Links | Entrez ID:152273; OMIM: NA; Uniprot ID:FGD5_HUMAN; ENSEMBL ID: ENSG00000154783; HGNC ID: 19117 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.412406
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 28 / 564012 | 49 | |
| neonate | 8 / 31097 | 257 |  |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 35 / 1939121 | 18 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 4 / 94178 | 42 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 94 / 3360307 | 27 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 7 / 89626 | 78 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 10 / 211777 | 47 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 9 / 336974 | 26 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 5 / 53952 | 92 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 14 / 13680 | 1023 |  |
| uterus | 1 / 232878 | 4 | |
| vascular | 4 / 51780 | 77 | |
Microarray in - Probe name: A_23_P258151
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.91 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.64 ± 0.28 | |
| Basal Part of Pons | 4.34 ± 0.38 | |
| Cerebellar Cortex | 4.28 ± 0.45 | |
| Cerebellar Nuclei | 5.73 ± 0.6 | |
| Claustrum | 4.73 ± 0.51 | |
| Epithalamus | 3.94 ± 0.79 | |
| Frontal Lobe | 4.81 ± 0.53 | |
| Globus Pallidus | 5.21 ± 0.44 | |
| Hypothalamus | 4.78 ± 0.36 | |
| Insula | 4.79 ± 0.37 | |
| Limbic Lobe | 4.61 ± 0.6 | |
| Mesencephalon | 5.01 ± 0.66 | |
| Myelencephalon | 4.91 ± 0.56 | |
| Occipital Lobe | 5.34 ± 0.59 | |
| Parietal Lobe | 5.05 ± 0.46 | |
| Pontine Tegmentum | 4.85 ± 0.56 | |
| Striatum | 5.22 ± 0.42 | |
| Subthalamus | 4.71 ± 0.48 | |
| Temporal Lobe | 4.68 ± 0.53 | |
| Thalamus | 4.99 ± 0.5 | |
| White Matter | 4.47 ± 0.89 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Fgd5 | CB | Cerebellum | 1.6 | |
| 2.21 | | |||
| Fgd5 | CTX | Cerebral cortex | 0.88 | |
| 0.89 | | |||
| Fgd5 | HIP | Hippocampal region | 0.9 | |
| 1.03 | | |||
| Fgd5 | HPF | Hippocampal formation | 1.38 | |
| 1.34 | | |||
| Fgd5 | HY | Hypothalamus | 1.04 | |
| 1.15 | | |||
| Fgd5 | LSX | Lateral septal complex | 9.77 | |
| 6.91 | | |||
| Fgd5 | MB | Midbrain | 0.78 | |
| 1.05 | | |||
| Fgd5 | MY | Medulla | 1.24 | |
| 1.63 | | |||
| Fgd5 | OLF | Olfactory bulb | 1.46 | |
| 1.38 | | |||
| Fgd5 | P | Pons | 0.94 | |
| 1.04 | | |||
| Fgd5 | PAL | Pallidum | 0.69 | |
| 0.74 | | |||
| Fgd5 | RHP | Retrohippocampal region | 2.36 | |
| 1.91 | | |||
| Fgd5 | sAMY | Striatum-like amygdalar nuclei | 0.45 | |
| 0.65 | | |||
| Fgd5 | STR | Striatum | 1.13 | |
| 0.92 | | |||
| Fgd5 | STRd | Striatum dorsal region | 0.51 | |
| 0.48 | | |||
| Fgd5 | STRv | Striatum ventral region | 0.96 | |
| 0.84 | | |||
| Fgd5 | TH | Thalamus | 2.62 | |
| 2.86 | |