AutismKB 2.0

Annotation Detail for CUX1


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Basic Information Top
Gene Symbol:CUX1 ( CASP,CDP,CDP/Cut,CDP1,COY1,CUTL1,CUX,Clox,Cux/CDP,GOLIM6,Nbla10317,p100,p110,p200,p75 )
Gene Full Name: cut-like homeobox 1
Band: 7q22.1
Quick LinksEntrez ID:1523; OMIM: 116896; Uniprot ID:CASP_HUMAN; ENSEMBL ID: ENSG00000160967; HGNC ID: 2557
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body5 / 7076170
blastocyst6 / 6231996
fetus65 / 564012115
neonate8 / 31097257
infant1 / 2362042
juvenile6 / 55556107
adult174 / 193912189
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma3 / 17475171
breast (mammary gland) tumor8 / 9417884
cervical tumor7 / 34366203
chondrosarcoma10 / 82823120
colorectal tumor15 / 114246131
esophageal tumor1 / 1729057
gastrointestinal tumor13 / 119369108
germ cell tumor30 / 263845113
glioma9 / 10688384
head and neck tumor42 / 136302308
kidney tumor8 / 68959116
leukemia10 / 95842104
liver tumor6 / 9635962
lung tumor13 / 103127126
lymphoma28 / 71755390
non-neoplasia28 / 97250287
normal381 / 3360307113
ovarian tumor8 / 76682104
pancreatic tumor4 / 10461638
primitive neuroectodermal tumor of the CNS15 / 125680119
prostate cancer3 / 10268029
retinoblastoma5 / 46356107
skin tumor3 / 12494924
soft tissue/muscle tissue tumor6 / 12519147
uterine tumor11 / 90257121
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue2 / 13106152
adrenal gland3 / 3319790
ascites3 / 4001574
bladder5 / 29757168
blood11 / 12347889
bone9 / 71655125
bone marrow4 / 4880181
brain189 / 1100989171
cervix10 / 48171207
connective tissue34 / 149255227
ear0 / 162120 
embryonic tissue17 / 21572278
esophagus1 / 2020949
eye15 / 21105471
heart8 / 8962689
intestine32 / 234472136
kidney30 / 211777141
larynx4 / 24145165
liver17 / 20774381
lung27 / 33697480
lymph25 / 44270564
lymph node4 / 9161043
mammary gland10 / 15327165
mouth32 / 67052477
muscle6 / 10771555
nerve4 / 15768253
ovary10 / 10205197
pancreas7 / 21481232
parathyroid0 / 205390 
pharynx1 / 4132824
pituitary gland0 / 165850 
placenta27 / 28082596
prostate22 / 189345116
salivary gland0 / 201550 
skin11 / 21057452
spleen7 / 53952129
stomach9 / 9661993
testis32 / 33044296
thymus75 / 81131924
thyroid8 / 47473168
tonsil1 / 1699958
trachea5 / 5241395
umbilical cord1 / 1368073
uterus29 / 232878124
vascular4 / 5178077
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 202367_at
Cell line Expression level Expression bar
721_B_lymphoblasts28.55
Adipocyte55.05
AdrenalCortex52
Adrenalgland40.95
Amygdala49.75
Appendix48.45
AtrioventricularNode30.35
BDCA4+_DentriticCells82.8
Bonemarrow49.25
BronchialEpithelialCells41.55
CD105+_Endothelial36.45
CD14+_Monocytes97.3
CD19+_BCells(neg._sel.)47.15
CD33+_Myeloid63.35
CD34+87.1
CD4+_Tcells19.1
CD56+_NKCells148.15
CD71+_EarlyErythroid34.85
CD8+_Tcells21.55
CardiacMyocytes59.4
Caudatenucleus48.35
Cerebellum76
CerebellumPeduncles100.15
CiliaryGanglion32.45
CingulateCortex61.25
Colorectaladenocarcinoma59.85
DorsalRootGanglion27.15
FetalThyroid56.1
Fetalbrain52.95
Fetalliver45.7
Fetallung41.35
GlobusPallidus30.8
Heart97.25
Hypothalamus55
Kidney50.2
Leukemia_chronicMyelogenousK-56244.1
Leukemia_promyelocytic-HL-6033.8
Leukemialymphoblastic(MOLT-4)50.85
Liver68.35
Lung73.2
Lymphnode41.9
Lymphoma_burkitts(Daudi)84.9
Lymphoma_burkitts(Raji)66.6
MedullaOblongata44.05
OccipitalLobe45.05
OlfactoryBulb48.6
Ovary32.6
Pancreas43.85
PancreaticIslet57.45
ParietalLobe50.7
Pituitary57
Placenta46.3
Pons45.8
PrefrontalCortex57.55
Prostate57.7
Salivarygland34.25
SkeletalMuscle50.35
Skin23.95
SmoothMuscle65.3
Spinalcord80.5
SubthalamicNucleus30.25
SuperiorCervicalGanglion52.55
TemporalLobe44.8
Testis42.6
TestisGermCell34.9
TestisIntersitial27.1
TestisLeydigCell46.95
TestisSeminiferousTubule40.3
Thalamus56.65
Thymus45.45
Thyroid88.95
Tongue46
Tonsil46.8
Trachea45.1
TrigeminalGanglion46.5
Uterus45.75
UterusCorpus44.95
WholeBlood56
Wholebrain42.9
colon49.2
pineal_day56.6
pineal_night57.58
retina60.275
small_intestine47.1
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_10261_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.82 ± 0.83
Basal Forebrain4.11 ± 0.46
Basal Part of Pons3.56 ± 0.42
Cerebellar Cortex4.62 ± 0.34
Cerebellar Nuclei3.82 ± 0.57
Claustrum5.54 ± 0.49
Epithalamus3.9 ± 0.59
Frontal Lobe3.66 ± 0.55
Globus Pallidus4.07 ± 0.63
Hypothalamus3.9 ± 0.86
Insula3.67 ± 0.54
Limbic Lobe3.6 ± 0.56
Mesencephalon4.02 ± 0.75
Myelencephalon3.92 ± 0.69
Occipital Lobe4.67 ± 0.94
Parietal Lobe4.09 ± 0.66
Pontine Tegmentum3.97 ± 0.75
Striatum3.55 ± 0.61
Subthalamus3.93 ± 0.23
Temporal Lobe3.76 ± 0.67
Thalamus4.15 ± 0.56
White Matter4.88 ± 0.41
Mouse Brain ISH
Peptide Top
Peptide Name Peptide Lengh Peptide Start Peptide End Peptide Sequence Source
PAp00009896 22 787 808 EAQDAPGLDPQGAADCAQGVLR Peptide Atlas

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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