AutismKB 2.0

Annotation Detail for CX3CR1


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Basic Information Top
Gene Symbol:CX3CR1 ( CCRL1,CMKBRL1,CMKDR1,GPR13,GPRV28,V28 )
Gene Full Name: chemokine (C-X3-C motif) receptor 1
Band: 3p22.2
Quick LinksEntrez ID:1524; OMIM: 601470; Uniprot ID:CX3C1_HUMAN; ENSEMBL ID: ENSG00000168329; HGNC ID: 2558
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus7 / 56401212
neonate1 / 3109732
infant0 / 236200 
juvenile0 / 555560 
adult22 / 193912111
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma2 / 8282324
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor1 / 2638453
glioma0 / 1068830 
head and neck tumor1 / 1363027
kidney tumor5 / 6895972
leukemia3 / 9584231
liver tumor1 / 9635910
lung tumor1 / 1031279
lymphoma0 / 717550 
non-neoplasia2 / 9725020
normal109 / 336030732
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood2 / 12347816
bone0 / 716550 
bone marrow0 / 488010 
brain65 / 110098959
cervix0 / 481710 
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney9 / 21177742
larynx0 / 241450 
liver1 / 2077434
lung4 / 33697411
lymph0 / 442700 
lymph node0 / 916100 
mammary gland3 / 15327119
mouth1 / 6705214
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas3 / 21481213
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta6 / 28082521
prostate7 / 18934536
salivary gland0 / 201550 
skin0 / 2105740 
spleen4 / 5395274
stomach0 / 966190 
testis1 / 3304423
thymus1 / 8113112
thyroid1 / 4747321
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus4 / 23287817
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 205898_at
Cell line Expression level Expression bar
721_B_lymphoblasts6.15
Adipocyte5.95
AdrenalCortex7.6
Adrenalgland6
Amygdala238.55
Appendix7.55
AtrioventricularNode5.4
BDCA4+_DentriticCells271.1
Bonemarrow21.7
BronchialEpithelialCells5.25
CD105+_Endothelial8.7
CD14+_Monocytes1106.05
CD19+_BCells(neg._sel.)5.65
CD33+_Myeloid776.65
CD34+8.45
CD4+_Tcells58.75
CD56+_NKCells3632.9
CD71+_EarlyErythroid6.45
CD8+_Tcells513.05
CardiacMyocytes7.9
Caudatenucleus106.25
Cerebellum21.35
CerebellumPeduncles15.55
CiliaryGanglion5.2
CingulateCortex8.3
Colorectaladenocarcinoma5.75
DorsalRootGanglion5.8
FetalThyroid5.95
Fetalbrain6.65
Fetalliver6.05
Fetallung5.25
GlobusPallidus9.2
Heart9.6
Hypothalamus206.35
Kidney5.35
Leukemia_chronicMyelogenousK-5625.25
Leukemia_promyelocytic-HL-605.4
Leukemialymphoblastic(MOLT-4)4.55
Liver9.4
Lung8.25
Lymphnode5.45
Lymphoma_burkitts(Daudi)7.85
Lymphoma_burkitts(Raji)8.75
MedullaOblongata17.45
OccipitalLobe92.05
OlfactoryBulb8.2
Ovary4.75
Pancreas4.4
PancreaticIslet7.3
ParietalLobe11.25
Pituitary25.75
Placenta8.4
Pons7.9
PrefrontalCortex18.1
Prostate7.95
Salivarygland5.7
SkeletalMuscle8.8
Skin5.1
SmoothMuscle6.8
Spinalcord303.85
SubthalamicNucleus6.35
SuperiorCervicalGanglion10.55
TemporalLobe11.35
Testis5.25
TestisGermCell4.9
TestisIntersitial5.65
TestisLeydigCell6.85
TestisSeminiferousTubule5.7
Thalamus99.55
Thymus5.3
Thyroid7.4
Tongue6.8
Tonsil6.85
Trachea5.7
TrigeminalGanglion8.15
Uterus5.45
UterusCorpus6.1
WholeBlood914.1
Wholebrain116.2
colon5.5
pineal_day43
pineal_night23.4
retina64.65
small_intestine6.35
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16271_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala3.91 ± 1.06
Basal Forebrain3.46 ± 0.69
Basal Part of Pons4.25 ± 0.61
Cerebellar Cortex3.02 ± 0.76
Cerebellar Nuclei4.46 ± 0.63
Claustrum3.59 ± 0.95
Epithalamus3.93 ± 0.46
Frontal Lobe3.53 ± 0.82
Globus Pallidus5.31 ± 0.56
Hypothalamus3.44 ± 1.06
Insula3.7 ± 0.46
Limbic Lobe3.44 ± 0.9
Mesencephalon3.68 ± 0.87
Myelencephalon3.65 ± 0.83
Occipital Lobe3.26 ± 0.89
Parietal Lobe3.54 ± 0.85
Pontine Tegmentum3.43 ± 0.87
Striatum3.88 ± 0.79
Subthalamus4.21 ± 0.55
Temporal Lobe3.84 ± 0.81
Thalamus3.63 ± 0.88
White Matter4.97 ± 0.44
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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