Annotation Detail for SH3D19
Basic Information Top
| Gene Symbol: | SH3D19 ( EBP,EVE1,Kryn,MGC105136,MGC118910,MGC118911,MGC118912,MGC118913,SH3P19 ) |
|---|---|
| Gene Full Name: | SH3 domain containing 19 |
| Band: | 4q31.3 |
| Quick Links | Entrez ID:152503; OMIM: 608674; Uniprot ID:SH319_HUMAN; ENSEMBL ID: ENSG00000109686; HGNC ID: 30418 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.728240
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 11 / 564012 | 19 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 122 / 1939121 | 62 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 7 / 94178 | 74 | |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 11 / 82823 | 132 | |
| colorectal tumor | 17 / 114246 | 148 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 7 / 119369 | 58 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 4 / 136302 | 29 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 139 / 3360307 | 41 | |
| ovarian tumor | 3 / 76682 | 39 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 26 / 1100989 | 23 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 9 / 149255 | 60 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 13 / 215722 | 60 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 8 / 211054 | 37 | |
| heart | 0 / 89626 | 0 | |
| intestine | 29 / 234472 | 123 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 9 / 207743 | 43 | |
| lung | 14 / 336974 | 41 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 19 / 153271 | 123 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 6 / 214812 | 27 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 17 / 280825 | 60 | |
| prostate | 8 / 189345 | 42 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 8 / 96619 | 82 | |
| testis | 11 / 330442 | 33 | |
| thymus | 3 / 81131 | 36 | |
| thyroid | 5 / 47473 | 105 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 23 / 232878 | 98 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P33364
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.08 ± 0.42 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.46 ± 0.12 | |
| Basal Part of Pons | 7.49 ± 0.23 | |
| Cerebellar Cortex | 7.28 ± 0.25 | |
| Cerebellar Nuclei | 7.31 ± 0.27 | |
| Claustrum | 6.65 ± 0.54 | |
| Epithalamus | 7.5 ± 0.37 | |
| Frontal Lobe | 7.27 ± 0.38 | |
| Globus Pallidus | 7.85 ± 0.22 | |
| Hypothalamus | 7.25 ± 0.28 | |
| Insula | 7.18 ± 0.25 | |
| Limbic Lobe | 6.87 ± 0.46 | |
| Mesencephalon | 7.24 ± 0.38 | |
| Myelencephalon | 7.17 ± 0.34 | |
| Occipital Lobe | 6.81 ± 0.35 | |
| Parietal Lobe | 7.03 ± 0.43 | |
| Pontine Tegmentum | 7.12 ± 0.36 | |
| Striatum | 7.42 ± 0.43 | |
| Subthalamus | 7.14 ± 0.11 | |
| Temporal Lobe | 6.98 ± 0.34 | |
| Thalamus | 7.25 ± 0.43 | |
| White Matter | 8.5 ± 0.28 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Sh3d19 | CB | Cerebellum | 19.03 | |
| 26.25 | | |||
| Sh3d19 | CTX | Cerebral cortex | 21.63 | |
| 17.13 | | |||
| Sh3d19 | HIP | Hippocampal region | 19.91 | |
| 23.18 | | |||
| Sh3d19 | HPF | Hippocampal formation | 19.16 | |
| 19.06 | | |||
| Sh3d19 | HY | Hypothalamus | 9.01 | |
| 9.76 | | |||
| Sh3d19 | LSX | Lateral septal complex | 8.07 | |
| 6.37 | | |||
| Sh3d19 | MB | Midbrain | 6.94 | |
| 6.32 | | |||
| Sh3d19 | MY | Medulla | 15.25 | |
| 18.66 | | |||
| Sh3d19 | OLF | Olfactory bulb | 20.62 | |
| 16.06 | | |||
| Sh3d19 | P | Pons | 9.03 | |
| 8.53 | | |||
| Sh3d19 | PAL | Pallidum | 10.19 | |
| 8.85 | | |||
| Sh3d19 | RHP | Retrohippocampal region | 17.51 | |
| 13.52 | | |||
| Sh3d19 | sAMY | Striatum-like amygdalar nuclei | 7.92 | |
| 5.98 | | |||
| Sh3d19 | STR | Striatum | 9.47 | |
| 8.31 | | |||
| Sh3d19 | STRd | Striatum dorsal region | 8.67 | |
| 8.44 | | |||
| Sh3d19 | STRv | Striatum ventral region | 13.21 | |
| 9.36 | | |||
| Sh3d19 | TH | Thalamus | 89.62 | |
| 93.32 | |