Annotation Detail for NFXL1
Basic Information Top
| Gene Symbol: | NFXL1 ( FLJ16294,HOZFP,URCC5 ) |
|---|---|
| Gene Full Name: | nuclear transcription factor, X-box binding-like 1 |
| Band: | 4p12 |
| Quick Links | Entrez ID:152518; OMIM: NA; Uniprot ID:NFXL1_HUMAN; ENSEMBL ID: ENSG00000170448; HGNC ID: 18726 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.646325
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 9 / 564012 | 15 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 24 / 1939121 | 12 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 35 / 3360307 | 10 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 5 / 102680 | 48 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 5 / 125191 | 39 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 9 / 1100989 | 8 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 2 / 89626 | 22 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 5 / 189345 | 26 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 15 / 330442 | 45 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 5 / 232878 | 21 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: CUST_8308_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.16 ± 0.26 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.1 ± 0.16 | |
| Basal Part of Pons | 7.06 ± 0.27 | |
| Cerebellar Cortex | 7.33 ± 0.19 | |
| Cerebellar Nuclei | 6.94 ± 0.32 | |
| Claustrum | 7.28 ± 0.41 | |
| Epithalamus | 7.34 ± 0.11 | |
| Frontal Lobe | 7 ± 0.28 | |
| Globus Pallidus | 6.92 ± 0.17 | |
| Hypothalamus | 7 ± 0.32 | |
| Insula | 7 ± 0.27 | |
| Limbic Lobe | 7.17 ± 0.32 | |
| Mesencephalon | 7.08 ± 0.37 | |
| Myelencephalon | 7.07 ± 0.27 | |
| Occipital Lobe | 7.35 ± 0.35 | |
| Parietal Lobe | 7.11 ± 0.24 | |
| Pontine Tegmentum | 6.99 ± 0.23 | |
| Striatum | 6.99 ± 0.28 | |
| Subthalamus | 7.17 ± 0.08 | |
| Temporal Lobe | 7.01 ± 0.31 | |
| Thalamus | 6.96 ± 0.19 | |
| White Matter | 7.16 ± 0.19 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Nfxl1 | CB | Cerebellum | 26.36 | |
| 24.12 | | |||
| Nfxl1 | CTX | Cerebral cortex | 54.42 | |
| 42.29 | | |||
| Nfxl1 | HIP | Hippocampal region | 57.04 | |
| 65.93 | | |||
| Nfxl1 | HPF | Hippocampal formation | 55.4 | |
| 54.08 | | |||
| Nfxl1 | HY | Hypothalamus | 34.25 | |
| 20.32 | | |||
| Nfxl1 | LSX | Lateral septal complex | 35.42 | |
| 18.04 | | |||
| Nfxl1 | MB | Midbrain | 22.92 | |
| 14.71 | | |||
| Nfxl1 | MY | Medulla | 40.42 | |
| 30.65 | | |||
| Nfxl1 | OLF | Olfactory bulb | 91.39 | |
| 70.95 | | |||
| Nfxl1 | P | Pons | 31.18 | |
| 20.58 | | |||
| Nfxl1 | PAL | Pallidum | 30.91 | |
| 19.99 | | |||
| Nfxl1 | RHP | Retrohippocampal region | 50.66 | |
| 39.2 | | |||
| Nfxl1 | sAMY | Striatum-like amygdalar nuclei | 51.39 | |
| 34.05 | | |||
| Nfxl1 | STR | Striatum | 46.49 | |
| 28.88 | | |||
| Nfxl1 | STRd | Striatum dorsal region | 44.83 | |
| 28.51 | | |||
| Nfxl1 | STRv | Striatum ventral region | 51.19 | |
| 28.89 | | |||
| Nfxl1 | TH | Thalamus | 20.97 | |
| 13.95 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00042329 | 13 | 457 | 469 | RMPCHKPYLCETK | Peptide Atlas |