Annotation Detail for RASGEF1B
Basic Information Top
| Gene Symbol: | RASGEF1B ( FLJ31695,GPIG4,MGC46251 ) |
|---|---|
| Gene Full Name: | RasGEF domain family, member 1B |
| Band: | 4q21.21 |
| Quick Links | Entrez ID:153020; OMIM: NA; Uniprot ID:RGF1B_HUMAN; ENSEMBL ID: ENSG00000138670; HGNC ID: 24881 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591696
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 19 / 1939121 | 9 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 3 / 97250 | 30 | |
| normal | 27 / 3360307 | 8 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 12 / 1100989 | 10 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 4 / 149255 | 26 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 3 / 234472 | 12 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 1 / 207743 | 4 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_11153_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.11 ± 1.06 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 2.68 ± 0.41 | |
| Basal Part of Pons | 4.35 ± 0.45 | |
| Cerebellar Cortex | 2.33 ± 0.33 | |
| Cerebellar Nuclei | 3.46 ± 0.6 | |
| Claustrum | 3.28 ± 0.75 | |
| Epithalamus | 2.7 ± 1.01 | |
| Frontal Lobe | 2.65 ± 0.74 | |
| Globus Pallidus | 3.01 ± 0.51 | |
| Hypothalamus | 2.88 ± 0.86 | |
| Insula | 2.7 ± 0.52 | |
| Limbic Lobe | 2.84 ± 0.96 | |
| Mesencephalon | 3.07 ± 0.79 | |
| Myelencephalon | 3 ± 0.93 | |
| Occipital Lobe | 3.62 ± 0.85 | |
| Parietal Lobe | 2.96 ± 0.81 | |
| Pontine Tegmentum | 2.88 ± 0.77 | |
| Striatum | 4.89 ± 0.51 | |
| Subthalamus | 3.7 ± 0.54 | |
| Temporal Lobe | 3.04 ± 0.92 | |
| Thalamus | 3.5 ± 0.88 | |
| White Matter | 3.44 ± 0.67 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Rasgef1b | CB | Cerebellum | 21.67 | |
| 26.56 | | |||
| Rasgef1b | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| Rasgef1b | HIP | Hippocampal region | 17.61 | |
| 21.16 | | |||
| Rasgef1b | HPF | Hippocampal formation | 38.62 | |
| 46.63 | | |||
| Rasgef1b | HY | Hypothalamus | 23.38 | |
| 22.76 | | |||
| Rasgef1b | LSX | Lateral septal complex | 36.34 | |
| 31.17 | | |||
| Rasgef1b | MB | Midbrain | 43.22 | |
| 47.1 | | |||
| Rasgef1b | MY | Medulla | 43.28 | |
| 65.97 | | |||
| Rasgef1b | OLF | Olfactory bulb | 87.57 | |
| 93.5 | | |||
| Rasgef1b | P | Pons | 42.61 | |
| 60.16 | | |||
| Rasgef1b | PAL | Pallidum | 37.88 | |
| 40.41 | | |||
| Rasgef1b | RHP | Retrohippocampal region | 70.96 | |
| 78.63 | | |||
| Rasgef1b | sAMY | Striatum-like amygdalar nuclei | 21.99 | |
| 19.32 | | |||
| Rasgef1b | STR | Striatum | 100 | |
| 100 | | |||
| Rasgef1b | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| Rasgef1b | STRv | Striatum ventral region | 96.87 | |
| 90.41 | | |||
| Rasgef1b | TH | Thalamus | 97.28 | |
| 100 | |