AutismKB 2.0

Annotation Detail for C5orf41


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Basic Information Top
Gene Symbol:C5orf41 ( DKFZp313F2319,DKFZp686G2059,LRF )
Gene Full Name: chromosome 5 open reading frame 41
Band: 5q35.1
Quick LinksEntrez ID:153222; OMIM: NA; Uniprot ID:CE041_HUMAN; ENSEMBL ID: ENSG00000164463; HGNC ID:
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus28 / 56401249
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult80 / 193912141
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor1 / 1279478
bladder carcinoma1 / 1747557
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma4 / 8282348
colorectal tumor1 / 1142468
esophageal tumor0 / 172900 
gastrointestinal tumor2 / 11936916
germ cell tumor8 / 26384530
glioma1 / 1068839
head and neck tumor1 / 1363027
kidney tumor2 / 6895929
leukemia2 / 9584220
liver tumor2 / 9635920
lung tumor1 / 1031279
lymphoma2 / 7175527
non-neoplasia4 / 9725041
normal159 / 336030747
ovarian tumor1 / 7668213
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer2 / 10268019
retinoblastoma0 / 463560 
skin tumor2 / 12494916
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites0 / 400150 
bladder1 / 2975733
blood6 / 12347848
bone2 / 7165527
bone marrow8 / 48801163
brain28 / 110098925
cervix0 / 481710 
connective tissue4 / 14925526
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye12 / 21105456
heart3 / 8962633
intestine2 / 2344728
kidney17 / 21177780
larynx0 / 241450 
liver8 / 20774338
lung10 / 33697429
lymph1 / 4427022
lymph node15 / 91610163
mammary gland4 / 15327126
mouth1 / 6705214
muscle2 / 10771518
nerve0 / 157680 
ovary2 / 10205119
pancreas8 / 21481237
parathyroid2 / 2053997
pharynx2 / 4132848
pituitary gland2 / 16585120
placenta24 / 28082585
prostate11 / 18934558
salivary gland0 / 201550 
skin4 / 21057418
spleen2 / 5395237
stomach1 / 9661910
testis14 / 33044242
thymus3 / 8113136
thyroid2 / 4747342
tonsil0 / 169990 
trachea1 / 5241319
umbilical cord0 / 136800 
uterus8 / 23287834
vascular1 / 5178019
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_5734_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala9.2 ± 0.95
Basal Forebrain8.98 ± 0.51
Basal Part of Pons8.61 ± 1.11
Cerebellar Cortex8.37 ± 0.31
Cerebellar Nuclei8.4 ± 0.78
Claustrum9.71 ± 0.89
Epithalamus8.33 ± 0.62
Frontal Lobe8.29 ± 0.69
Globus Pallidus10.21 ± 0.64
Hypothalamus8.35 ± 0.47
Insula8.42 ± 0.73
Limbic Lobe9 ± 1.01
Mesencephalon8.98 ± 0.75
Myelencephalon8.84 ± 0.98
Occipital Lobe9.3 ± 0.69
Parietal Lobe8.84 ± 0.83
Pontine Tegmentum8.68 ± 0.82
Striatum9.33 ± 1.07
Subthalamus9.2 ± 0.67
Temporal Lobe8.62 ± 0.85
Thalamus8.55 ± 0.63
White Matter9.82 ± 1.01
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
A930001N09RikCBCerebellum10.99
11.11
A930001N09RikCTXCerebral cortex31.96
21.41
A930001N09RikHIPHippocampal region17.26
15.84
A930001N09RikHPFHippocampal formation26.92
22.52
A930001N09RikHYHypothalamus23.99
18.8
A930001N09RikLSXLateral septal complex10.51
7.22
A930001N09RikMBMidbrain25.75
21.63
A930001N09RikMYMedulla27.94
28.4
A930001N09RikOLFOlfactory bulb28.36
19.35
A930001N09RikPPons26.97
26.1
A930001N09RikPALPallidum27.66
24.39
A930001N09RikRHPRetrohippocampal region47.68
35.17
A930001N09RiksAMYStriatum-like amygdalar nuclei32.56
22.15
A930001N09RikSTRStriatum28.22
18.69
A930001N09RikSTRdStriatum dorsal region31.27
20.97
A930001N09RikSTRvStriatum ventral region24.56
15.2
A930001N09RikTHThalamus19.47
15.32
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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