Annotation Detail for CYLC1
Basic Information Top
Gene Symbol: | CYLC1 ( CYCL1 ) |
---|---|
Gene Full Name: | cylicin, basic protein of sperm head cytoskeleton 1 |
Band: | Xq21.1 |
Quick Links | Entrez ID:1538; OMIM: 300768; Uniprot ID:CYLC1_HUMAN; ENSEMBL ID: ENSG00000183035; HGNC ID: 2582 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.444230
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 0 / 70761 | 0 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 2 / 564012 | 3 | |
neonate | 0 / 31097 | 0 | |
infant | 0 / 23620 | 0 | |
juvenile | 0 / 55556 | 0 | |
adult | 0 / 1939121 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 0 / 12794 | 0 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 0 / 114246 | 0 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 0 / 119369 | 0 | |
germ cell tumor | 0 / 263845 | 0 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 0 / 68959 | 0 | |
leukemia | 0 / 95842 | 0 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 0 / 97250 | 0 | |
normal | 36 / 3360307 | 10 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 0 / 104616 | 0 | |
primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 0 / 46356 | 0 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
uterine tumor | 0 / 90257 | 0 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 0 / 33197 | 0 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 0 / 123478 | 0 | |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 0 / 1100989 | 0 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 0 / 149255 | 0 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 0 / 215722 | 0 | |
esophagus | 0 / 20209 | 0 | |
eye | 0 / 211054 | 0 | |
heart | 0 / 89626 | 0 | |
intestine | 0 / 234472 | 0 | |
kidney | 0 / 211777 | 0 | |
larynx | 0 / 24145 | 0 | |
liver | 0 / 207743 | 0 | |
lung | 0 / 336974 | 0 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 0 / 107715 | 0 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 0 / 214812 | 0 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 0 / 280825 | 0 | |
prostate | 0 / 189345 | 0 | |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 0 / 53952 | 0 | |
stomach | 0 / 96619 | 0 | |
testis | 34 / 330442 | 102 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 0 / 232878 | 0 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 216778_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 7.3 | |
Adipocyte | 6.45 | |
AdrenalCortex | 7.8 | |
Adrenalgland | 5.9 | |
Amygdala | 6.7 | |
Appendix | 11.1 | |
AtrioventricularNode | 5.85 | |
BDCA4+_DentriticCells | 6.55 | |
Bonemarrow | 7.3 | |
BronchialEpithelialCells | 6.4 | |
CD105+_Endothelial | 6.5 | |
CD14+_Monocytes | 6.95 | |
CD19+_BCells(neg._sel.) | 6.8 | |
CD33+_Myeloid | 8 | |
CD34+ | 7.85 | |
CD4+_Tcells | 6.65 | |
CD56+_NKCells | 7.3 | |
CD71+_EarlyErythroid | 6.35 | |
CD8+_Tcells | 5.9 | |
CardiacMyocytes | 9.75 | |
Caudatenucleus | 5.9 | |
Cerebellum | 5.45 | |
CerebellumPeduncles | 7.95 | |
CiliaryGanglion | 5.65 | |
CingulateCortex | 7 | |
Colorectaladenocarcinoma | 6.6 | |
DorsalRootGanglion | 5.8 | |
FetalThyroid | 6.5 | |
Fetalbrain | 6.35 | |
Fetalliver | 5.9 | |
Fetallung | 5.1 | |
GlobusPallidus | 5.25 | |
Heart | 10.5 | |
Hypothalamus | 6.85 | |
Kidney | 5.95 | |
Leukemia_chronicMyelogenousK-562 | 5.9 | |
Leukemia_promyelocytic-HL-60 | 5.85 | |
Leukemialymphoblastic(MOLT-4) | 5.1 | |
Liver | 9.7 | |
Lung | 7.1 | |
Lymphnode | 5.45 | |
Lymphoma_burkitts(Daudi) | 8.75 | |
Lymphoma_burkitts(Raji) | 9.85 | |
MedullaOblongata | 9.7 | |
OccipitalLobe | 5.85 | |
OlfactoryBulb | 5.1 | |
Ovary | 4.8 | |
Pancreas | 5.45 | |
PancreaticIslet | 7.15 | |
ParietalLobe | 7.45 | |
Pituitary | 7.7 | |
Placenta | 6.5 | |
Pons | 6.65 | |
PrefrontalCortex | 7.95 | |
Prostate | 7.5 | |
Salivarygland | 5.55 | |
SkeletalMuscle | 9.4 | |
Skin | 5.75 | |
SmoothMuscle | 7.4 | |
Spinalcord | 7.2 | |
SubthalamicNucleus | 6.3 | |
SuperiorCervicalGanglion | 9.35 | |
TemporalLobe | 6.3 | |
Testis | 9.45 | |
TestisGermCell | 47.5 | |
TestisIntersitial | 17.2 | |
TestisLeydigCell | 43.55 | |
TestisSeminiferousTubule | 130.8 | |
Thalamus | 6.9 | |
Thymus | 5 | |
Thyroid | 7.85 | |
Tongue | 7.2 | |
Tonsil | 6.55 | |
Trachea | 5.5 | |
TrigeminalGanglion | 7.85 | |
Uterus | 5.15 | |
UterusCorpus | 6.55 | |
WholeBlood | 7.15 | |
Wholebrain | 5.25 | |
colon | 6.65 | |
pineal_day | 8 | |
pineal_night | 7.88 | |
retina | 7.95 | |
small_intestine | 6.35 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: A_23_P398197
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 2.58 ± 1.16 | |
Basal Forebrain | 2.13 ± 0.63 | |
Basal Part of Pons | 1.82 ± 0.65 | |
Cerebellar Cortex | 1.97 ± 1.13 | |
Cerebellar Nuclei | 2.73 ± 1.14 | |
Claustrum | 3.12 ± 0.99 | |
Epithalamus | 1.96 ± 0.98 | |
Frontal Lobe | 2.03 ± 1 | |
Globus Pallidus | 2.7 ± 0.45 | |
Hypothalamus | 2.49 ± 0.85 | |
Insula | 1.84 ± 0.48 | |
Limbic Lobe | 2.06 ± 0.82 | |
Mesencephalon | 2.27 ± 0.83 | |
Myelencephalon | 2.15 ± 0.98 | |
Occipital Lobe | 2.19 ± 1.08 | |
Parietal Lobe | 2.21 ± 1.23 | |
Pontine Tegmentum | 2.18 ± 0.94 | |
Striatum | 2.24 ± 0.67 | |
Subthalamus | 2.03 ± 0.76 | |
Temporal Lobe | 2.01 ± 1.09 | |
Thalamus | 1.98 ± 0.86 | |
White Matter | 2.47 ± 0.56 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Cylc1 | CB | Cerebellum | 1.26 | |
2.63 | ||||
Cylc1 | CTX | Cerebral cortex | 0.82 | |
1.01 | ||||
Cylc1 | HIP | Hippocampal region | 0.36 | |
0.72 | ||||
Cylc1 | HPF | Hippocampal formation | 0.4 | |
0.68 | ||||
Cylc1 | HY | Hypothalamus | 1.21 | |
1.57 | ||||
Cylc1 | LSX | Lateral septal complex | 0.35 | |
0.53 | ||||
Cylc1 | MB | Midbrain | 0.6 | |
0.93 | ||||
Cylc1 | MY | Medulla | 1.08 | |
1.58 | ||||
Cylc1 | OLF | Olfactory bulb | 1.22 | |
2.36 | ||||
Cylc1 | P | Pons | 0.33 | |
0.43 | ||||
Cylc1 | PAL | Pallidum | 0.26 | |
0.27 | ||||
Cylc1 | RHP | Retrohippocampal region | 0.42 | |
0.58 | ||||
Cylc1 | sAMY | Striatum-like amygdalar nuclei | 0.5 | |
0.56 | ||||
Cylc1 | STR | Striatum | 0.52 | |
0.59 | ||||
Cylc1 | STRd | Striatum dorsal region | 0.55 | |
0.65 | ||||
Cylc1 | STRv | Striatum ventral region | 0.36 | |
0.32 | ||||
Cylc1 | TH | Thalamus | 2.83 | |
3.78 |