Annotation Detail for CNKSR3
Basic Information Top
| Gene Symbol: | CNKSR3 ( FLJ31349,MAGI1 ) |
|---|---|
| Gene Full Name: | CNKSR family member 3 |
| Band: | 6q25.2 |
| Quick Links | Entrez ID:154043; OMIM: NA; Uniprot ID:CNKR3_HUMAN; ENSEMBL ID: ENSG00000153721; HGNC ID: 23034 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.16064
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 14 / 564012 | 24 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 34 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 |  |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 60 / 3360307 | 17 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 13 / 1100989 | 11 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 4 / 207743 | 19 | |
| lung | 11 / 336974 | 32 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 9 / 330442 | 27 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_24_P66592
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.11 ± 0.88 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.36 ± 0.53 | |
| Basal Part of Pons | 3.27 ± 0.52 | |
| Cerebellar Cortex | 3.01 ± 0.74 | |
| Cerebellar Nuclei | 3.61 ± 0.75 | |
| Claustrum | 3.62 ± 0.85 | |
| Epithalamus | 3.55 ± 0.54 | |
| Frontal Lobe | 3.53 ± 0.87 | |
| Globus Pallidus | 4.65 ± 0.45 | |
| Hypothalamus | 3.11 ± 0.55 | |
| Insula | 3.03 ± 0.69 | |
| Limbic Lobe | 3.06 ± 0.81 | |
| Mesencephalon | 3.47 ± 0.76 | |
| Myelencephalon | 3.67 ± 0.77 | |
| Occipital Lobe | 3.63 ± 0.86 | |
| Parietal Lobe | 3.59 ± 0.91 | |
| Pontine Tegmentum | 3.79 ± 0.87 | |
| Striatum | 4.48 ± 0.62 | |
| Subthalamus | 2.98 ± 0.34 | |
| Temporal Lobe | 3.18 ± 0.77 | |
| Thalamus | 4.79 ± 0.56 | |
| White Matter | 6.08 ± 0.49 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cnksr3 | CB | Cerebellum | 85.51 | |
| 100 | | |||
| Cnksr3 | CTX | Cerebral cortex | 3.92 | |
| 4.02 | | |||
| Cnksr3 | HIP | Hippocampal region | 3.12 | |
| 4.03 | | |||
| Cnksr3 | HPF | Hippocampal formation | 3.12 | |
| 3.48 | | |||
| Cnksr3 | HY | Hypothalamus | 3.66 | |
| 3.74 | | |||
| Cnksr3 | LSX | Lateral septal complex | 3.25 | |
| 3.95 | | |||
| Cnksr3 | MB | Midbrain | 3.22 | |
| 4.06 | | |||
| Cnksr3 | MY | Medulla | 6.5 | |
| 9.35 | | |||
| Cnksr3 | OLF | Olfactory bulb | 8.02 | |
| 7.67 | | |||
| Cnksr3 | P | Pons | 3.87 | |
| 4.89 | | |||
| Cnksr3 | PAL | Pallidum | 4.25 | |
| 4.64 | | |||
| Cnksr3 | RHP | Retrohippocampal region | 3.12 | |
| 2.77 | | |||
| Cnksr3 | sAMY | Striatum-like amygdalar nuclei | 1.56 | |
| 1.86 | | |||
| Cnksr3 | STR | Striatum | 3.71 | |
| 4.12 | | |||
| Cnksr3 | STRd | Striatum dorsal region | 3.82 | |
| 4.68 | | |||
| Cnksr3 | STRv | Striatum ventral region | 4.49 | |
| 3.45 | | |||
| Cnksr3 | TH | Thalamus | 50.54 | |
| 47.46 | |