AutismKB 2.0

Annotation Detail for RUNDC3B


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Basic Information Top
Gene Symbol:RUNDC3B ( FLJ30671,MGC26655,RPIB9,RPIP9 )
Gene Full Name: RUN domain containing 3B
Band: 7q21.12
Quick LinksEntrez ID:154661; OMIM: NA; Uniprot ID:RUN3B_HUMAN; ENSEMBL ID: ENSG00000105784; HGNC ID: 30286
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body1 / 7076114
blastocyst0 / 623190 
fetus14 / 56401224
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult4 / 19391212
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor1 / 9417810
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor4 / 26384515
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia1 / 9584210
liver tumor2 / 9635920
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal29 / 33603078
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS1 / 1256807
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor2 / 9025722
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow1 / 4880120
brain28 / 110098925
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue1 / 2157224
esophagus0 / 202090 
eye6 / 21105428
heart0 / 896260 
intestine2 / 2344728
kidney1 / 2117774
larynx0 / 241450 
liver3 / 20774314
lung0 / 3369740 
lymph0 / 442700 
lymph node0 / 916100 
mammary gland1 / 1532716
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis5 / 33044215
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea2 / 5241338
umbilical cord0 / 136800 
uterus2 / 2328788
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 215321_at
Cell line Expression level Expression bar
721_B_lymphoblasts8
Adipocyte7.2
AdrenalCortex16.15
Adrenalgland20.85
Amygdala22.55
Appendix11
AtrioventricularNode7.85
BDCA4+_DentriticCells7.1
Bonemarrow8.45
BronchialEpithelialCells6.9
CD105+_Endothelial7.15
CD14+_Monocytes8
CD19+_BCells(neg._sel.)7.5
CD33+_Myeloid9.35
CD34+8.75
CD4+_Tcells7.25
CD56+_NKCells8.15
CD71+_EarlyErythroid7.5
CD8+_Tcells6.5
CardiacMyocytes13.4
Caudatenucleus7.35
Cerebellum9.15
CerebellumPeduncles27.15
CiliaryGanglion8.55
CingulateCortex10.85
Colorectaladenocarcinoma7.1
DorsalRootGanglion6.95
FetalThyroid7.7
Fetalbrain18.4
Fetalliver6.6
Fetallung5.45
GlobusPallidus13.3
Heart13.05
Hypothalamus12.7
Kidney7.6
Leukemia_chronicMyelogenousK-5626.5
Leukemia_promyelocytic-HL-606.35
Leukemialymphoblastic(MOLT-4)5.5
Liver11.65
Lung7.9
Lymphnode5.85
Lymphoma_burkitts(Daudi)10.05
Lymphoma_burkitts(Raji)11.85
MedullaOblongata9
OccipitalLobe13.35
OlfactoryBulb6.25
Ovary5.75
Pancreas6.5
PancreaticIslet8.25
ParietalLobe10.3
Pituitary8.65
Placenta7.05
Pons10.95
PrefrontalCortex72.8
Prostate8.15
Salivarygland6.45
SkeletalMuscle20.2
Skin10.85
SmoothMuscle8.3
Spinalcord7.65
SubthalamicNucleus24.8
SuperiorCervicalGanglion13.7
TemporalLobe11.45
Testis6.4
TestisGermCell6.05
TestisIntersitial6.5
TestisLeydigCell8.05
TestisSeminiferousTubule6.4
Thalamus8.6
Thymus5.4
Thyroid8.5
Tongue8.7
Tonsil7.45
Trachea5.95
TrigeminalGanglion9.1
Uterus7.65
UterusCorpus9.25
WholeBlood7.65
Wholebrain9.55
colon7.6
pineal_day9.48
pineal_night9.52
retina8.95
small_intestine11.55
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_6614_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.12 ± 0.33
Basal Forebrain8.12 ± 0.29
Basal Part of Pons8.08 ± 0.44
Cerebellar Cortex7.93 ± 0.24
Cerebellar Nuclei8.01 ± 0.33
Claustrum8.04 ± 0.46
Epithalamus6.95 ± 0.74
Frontal Lobe7.77 ± 0.33
Globus Pallidus8.02 ± 0.13
Hypothalamus8.13 ± 0.19
Insula7.77 ± 0.3
Limbic Lobe7.99 ± 0.38
Mesencephalon8.08 ± 0.38
Myelencephalon7.91 ± 0.39
Occipital Lobe8.35 ± 0.33
Parietal Lobe8 ± 0.32
Pontine Tegmentum7.94 ± 0.34
Striatum8.49 ± 0.35
Subthalamus8.24 ± 0.12
Temporal Lobe7.83 ± 0.32
Thalamus7.8 ± 0.32
White Matter6.91 ± 0.35
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Gm440CBCerebellum55.43
89.81
Gm440CTXCerebral cortex52.84
38.31
Gm440HIPHippocampal region28.22
39.91
Gm440HPFHippocampal formation34.87
38.49
Gm440HYHypothalamus28.48
21.08
Gm440LSXLateral septal complex27.77
19.89
Gm440MBMidbrain36.72
31.58
Gm440MYMedulla34.38
32.53
Gm440OLFOlfactory bulb45.23
34.54
Gm440PPons31.52
28.35
Gm440PALPallidum28.26
22.89
Gm440RHPRetrohippocampal region47.56
38.55
Gm440sAMYStriatum-like amygdalar nuclei24.69
18.04
Gm440STRStriatum22.1
15.64
Gm440STRdStriatum dorsal region21.32
15.62
Gm440STRvStriatum ventral region22.63
13.93
Gm440THThalamus24.04
20.11
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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