Annotation Detail for VKORC1L1
Basic Information Top
| Gene Symbol: | VKORC1L1 ( DKFZp762H0113 ) |
|---|---|
| Gene Full Name: | vitamin K epoxide reductase complex, subunit 1-like 1 |
| Band: | 7q11.21 |
| Quick Links | Entrez ID:154807; OMIM: 608838; Uniprot ID:VKORL_HUMAN; ENSEMBL ID: ENSG00000196715; HGNC ID: 21492 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.427232
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 2 / 62319 | 32 |  |
| fetus | 32 / 564012 | 56 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 77 / 1939121 | 39 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 5 / 114246 | 43 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 11 / 119369 | 92 | |
| germ cell tumor | 24 / 263845 | 90 | |
| glioma | 1 / 106883 | 9 |  |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 10 / 71755 | 139 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 114 / 3360307 | 33 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 12 / 102680 | 116 | |
| retinoblastoma | 5 / 46356 | 107 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 8 / 125191 | 63 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 6 / 40015 | 149 | |
| bladder | 2 / 29757 | 67 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 25 / 1100989 | 22 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 7 / 149255 | 46 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 7 / 211054 | 33 | |
| heart | 8 / 89626 | 89 | |
| intestine | 11 / 234472 | 46 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 0 / 24145 | 0 | |
| liver | 5 / 207743 | 24 | |
| lung | 12 / 336974 | 35 | |
| lymph | 10 / 44270 | 225 |  |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 3 / 153271 | 19 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 8 / 210574 | 37 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 3 / 96619 | 31 | |
| testis | 20 / 330442 | 60 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 3 / 51780 | 57 | |
Microarray in - Probe name: CUST_6927_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.52 ± 0.71 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.43 ± 0.66 | |
| Basal Part of Pons | 4.61 ± 0.54 | |
| Cerebellar Cortex | 4.96 ± 0.35 | |
| Cerebellar Nuclei | 4.48 ± 0.58 | |
| Claustrum | 4.62 ± 0.94 | |
| Epithalamus | 4.67 ± 0.55 | |
| Frontal Lobe | 4.91 ± 0.5 | |
| Globus Pallidus | 3.78 ± 0.58 | |
| Hypothalamus | 4.75 ± 0.62 | |
| Insula | 4.89 ± 0.44 | |
| Limbic Lobe | 4.59 ± 0.56 | |
| Mesencephalon | 4.7 ± 0.61 | |
| Myelencephalon | 4.65 ± 0.58 | |
| Occipital Lobe | 4.28 ± 0.58 | |
| Parietal Lobe | 4.69 ± 0.61 | |
| Pontine Tegmentum | 4.63 ± 0.68 | |
| Striatum | 4.03 ± 0.71 | |
| Subthalamus | 4.73 ± 0.15 | |
| Temporal Lobe | 4.82 ± 0.52 | |
| Thalamus | 4.57 ± 0.55 | |
| White Matter | 4.77 ± 0.64 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Vkorc1l1 | CB | Cerebellum | 3.74 | |
| 3.58 | | |||
| Vkorc1l1 | CTX | Cerebral cortex | 4.06 | |
| 1.65 | | |||
| Vkorc1l1 | HIP | Hippocampal region | 5.3 | |
| 4.26 | | |||
| Vkorc1l1 | HPF | Hippocampal formation | 4.65 | |
| 3.05 | | |||
| Vkorc1l1 | HY | Hypothalamus | 2.14 | |
| 1.12 | | |||
| Vkorc1l1 | LSX | Lateral septal complex | 0.05 | |
| 0 | | |||
| Vkorc1l1 | MB | Midbrain | 1.46 | |
| 0.78 | | |||
| Vkorc1l1 | MY | Medulla | 6.46 | |
| 5.74 | | |||
| Vkorc1l1 | OLF | Olfactory bulb | 2.6 | |
| 1.09 | | |||
| Vkorc1l1 | P | Pons | 2.23 | |
| 1.07 | | |||
| Vkorc1l1 | PAL | Pallidum | 2.59 | |
| 1.33 | | |||
| Vkorc1l1 | RHP | Retrohippocampal region | 3.82 | |
| 1.68 | | |||
| Vkorc1l1 | sAMY | Striatum-like amygdalar nuclei | 1.51 | |
| 0.47 | | |||
| Vkorc1l1 | STR | Striatum | 0.76 | |
| 0.42 | | |||
| Vkorc1l1 | STRd | Striatum dorsal region | 0.77 | |
| 0.53 | | |||
| Vkorc1l1 | STRv | Striatum ventral region | 0.73 | |
| 0.22 | | |||
| Vkorc1l1 | TH | Thalamus | 0.59 | |
| 0.41 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00397184 | 11 | 69 | 79 | GFGLLGSIFGK | Peptide Atlas |