AutismKB 2.0

Annotation Detail for CYP2A13


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Basic Information Top
Gene Symbol:CYP2A13 ( CPAD,CYP2A )
Gene Full Name: cytochrome P450, family 2, subfamily A, polypeptide 13
Band: 19q13.2
Quick LinksEntrez ID:1553; OMIM: 608055; Uniprot ID:CP2AD_HUMAN; ENSEMBL ID: ENSG00000197838; HGNC ID: 2608
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body0 / 707610 
blastocyst0 / 623190 
fetus0 / 5640120 
neonate0 / 310970 
infant0 / 236200 
juvenile0 / 555560 
adult1 / 19391210 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor0 / 941780 
cervical tumor0 / 343660 
chondrosarcoma0 / 828230 
colorectal tumor0 / 1142460 
esophageal tumor0 / 172900 
gastrointestinal tumor0 / 1193690 
germ cell tumor0 / 2638450 
glioma0 / 1068830 
head and neck tumor0 / 1363020 
kidney tumor0 / 689590 
leukemia0 / 958420 
liver tumor0 / 963590 
lung tumor0 / 1031270 
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal0 / 33603070 
ovarian tumor0 / 766820 
pancreatic tumor0 / 1046160 
primitive neuroectodermal tumor of the CNS0 / 1256800 
prostate cancer0 / 1026800 
retinoblastoma0 / 463560 
skin tumor0 / 1249490 
soft tissue/muscle tissue tumor0 / 1251910 
uterine tumor0 / 902570 
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland0 / 331970 
ascites0 / 400150 
bladder0 / 297570 
blood0 / 1234780 
bone0 / 716550 
bone marrow0 / 488010 
brain0 / 11009890 
cervix0 / 481710 
connective tissue0 / 1492550 
ear0 / 162120 
embryonic tissue0 / 2157220 
esophagus0 / 202090 
eye0 / 2110540 
heart0 / 896260 
intestine0 / 2344720 
kidney0 / 2117770 
larynx0 / 241450 
liver0 / 2077430 
lung1 / 3369742
lymph0 / 442700 
lymph node0 / 916100 
mammary gland0 / 1532710 
mouth0 / 670520 
muscle0 / 1077150 
nerve0 / 157680 
ovary0 / 1020510 
pancreas0 / 2148120 
parathyroid0 / 205390 
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta0 / 2808250 
prostate0 / 1893450 
salivary gland0 / 201550 
skin0 / 2105740 
spleen0 / 539520 
stomach0 / 966190 
testis0 / 3304420 
thymus0 / 811310 
thyroid0 / 474730 
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus0 / 2328780 
vascular0 / 517800 
Microarray in BioGPS Top
Select probe  
  • Microarray Platform: GeneAtlas U133A, gcrma
  • Affymatrix Probe ID: 208327_at
Cell line Expression level Expression bar
721_B_lymphoblasts25.05
Adipocyte25
AdrenalCortex33.25
Adrenalgland23.1
Amygdala23.2
Appendix26.65
AtrioventricularNode32.25
BDCA4+_DentriticCells22.5
Bonemarrow27.05
BronchialEpithelialCells23.5
CD105+_Endothelial19
CD14+_Monocytes13.05
CD19+_BCells(neg._sel.)22.9
CD33+_Myeloid24.6
CD34+22.8
CD4+_Tcells24.65
CD56+_NKCells22.65
CD71+_EarlyErythroid23.2
CD8+_Tcells18.45
CardiacMyocytes36.65
Caudatenucleus22.15
Cerebellum20.5
CerebellumPeduncles30.3
CiliaryGanglion23.15
CingulateCortex25.95
Colorectaladenocarcinoma22.85
DorsalRootGanglion22.9
FetalThyroid24.7
Fetalbrain22.55
Fetalliver21.55
Fetallung18.4
GlobusPallidus20.4
Heart33.05
Hypothalamus25.05
Kidney23.3
Leukemia_chronicMyelogenousK-56221.75
Leukemia_promyelocytic-HL-6021.3
Leukemialymphoblastic(MOLT-4)20.95
Liver39.15
Lung26.1
Lymphnode20.75
Lymphoma_burkitts(Daudi)32.2
Lymphoma_burkitts(Raji)35.65
MedullaOblongata28.15
OccipitalLobe22.05
OlfactoryBulb19.25
Ovary18.85
Pancreas20.55
PancreaticIslet29.35
ParietalLobe28.05
Pituitary29.3
Placenta23.7
Pons33.5
PrefrontalCortex27.45
Prostate26.6
Salivarygland20.95
SkeletalMuscle34.45
Skin23.3
SmoothMuscle26.8
Spinalcord26.15
SubthalamicNucleus23.7
SuperiorCervicalGanglion37.25
TemporalLobe31.75
Testis20.85
TestisGermCell18.95
TestisIntersitial21.1
TestisLeydigCell33.45
TestisSeminiferousTubule21.9
Thalamus25.65
Thymus17.65
Thyroid27.85
Tongue27
Tonsil24.55
Trachea23.35
TrigeminalGanglion31.2
Uterus18.85
UterusCorpus23.1
WholeBlood24
Wholebrain13.25
colon23.65
pineal_day24.7
pineal_night23.56
retina29.35
small_intestine22.45
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: CUST_16418_PI416261804
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala2.03 ± 1.03
Basal Forebrain1.55 ± 0.21
Basal Part of Pons1.28 ± 0.43
Cerebellar Cortex1.53 ± 0.79
Cerebellar Nuclei1.88 ± 0.72
Claustrum2.43 ± 0.87
Epithalamus1.32 ± 0.76
Frontal Lobe1.46 ± 0.66
Globus Pallidus2 ± 0.3
Hypothalamus1.63 ± 0.7
Insula1.37 ± 0.45
Limbic Lobe1.55 ± 0.59
Mesencephalon1.76 ± 0.68
Myelencephalon1.64 ± 0.64
Occipital Lobe1.61 ± 0.52
Parietal Lobe1.62 ± 0.71
Pontine Tegmentum1.61 ± 0.67
Striatum1.82 ± 0.54
Subthalamus1.77 ± 0.65
Temporal Lobe1.51 ± 0.67
Thalamus1.55 ± 0.59
White Matter1.88 ± 0.14
Mouse Brain ISH
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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