Annotation Detail for RBM33
Basic Information Top
| Gene Symbol: | RBM33 ( DKFZp434D1319,MGC20460,PRR8 ) |
|---|---|
| Gene Full Name: | RNA binding motif protein 33 |
| Band: | 7q36.3 |
| Quick Links | Entrez ID:155435; OMIM: NA; Uniprot ID:RBM33_HUMAN; ENSEMBL ID: ENSG00000184863; HGNC ID: 27223 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591815
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 6 / 62319 | 96 |  |
| fetus | 77 / 564012 | 136 | |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 118 / 1939121 | 60 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 2 / 34366 | 58 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 5 / 119369 | 41 | |
| germ cell tumor | 23 / 263845 | 87 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 4 / 103127 | 38 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 8 / 97250 | 82 | |
| normal | 207 / 3360307 | 61 | |
| ovarian tumor | 9 / 76682 | 117 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 6 / 102680 | 58 | |
| retinoblastoma | 4 / 46356 | 86 | |
| skin tumor | 7 / 124949 | 56 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 9 / 90257 | 99 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 7 / 123478 | 56 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 53 / 1100989 | 48 | |
| cervix | 2 / 48171 | 41 | |
| connective tissue | 8 / 149255 | 53 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 14 / 211054 | 66 | |
| heart | 7 / 89626 | 78 | |
| intestine | 8 / 234472 | 34 | |
| kidney | 9 / 211777 | 42 | |
| larynx | 1 / 24145 | 41 | |
| liver | 4 / 207743 | 19 | |
| lung | 21 / 336974 | 62 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 14 / 91610 | 152 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 5 / 67052 | 74 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 10 / 102051 | 97 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 3 / 16585 | 180 | |
| placenta | 18 / 280825 | 64 | |
| prostate | 10 / 189345 | 52 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 7 / 210574 | 33 | |
| spleen | 4 / 53952 | 74 | |
| stomach | 6 / 96619 | 62 | |
| testis | 9 / 330442 | 27 | |
| thymus | 18 / 81131 | 221 |  |
| thyroid | 3 / 47473 | 63 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_13248_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 8.65 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 8.48 ± 0.16 | |
| Basal Part of Pons | 8.15 ± 0.3 | |
| Cerebellar Cortex | 8.45 ± 0.4 | |
| Cerebellar Nuclei | 8.17 ± 0.3 | |
| Claustrum | 8.72 ± 0.46 | |
| Epithalamus | 7.85 ± 0.27 | |
| Frontal Lobe | 8.07 ± 0.4 | |
| Globus Pallidus | 8.84 ± 0.15 | |
| Hypothalamus | 7.85 ± 0.32 | |
| Insula | 8.14 ± 0.44 | |
| Limbic Lobe | 8.45 ± 0.54 | |
| Mesencephalon | 8.3 ± 0.4 | |
| Myelencephalon | 8.3 ± 0.47 | |
| Occipital Lobe | 8.66 ± 0.48 | |
| Parietal Lobe | 8.36 ± 0.45 | |
| Pontine Tegmentum | 8.22 ± 0.5 | |
| Striatum | 8.41 ± 0.51 | |
| Subthalamus | 8.09 ± 0.21 | |
| Temporal Lobe | 8.22 ± 0.52 | |
| Thalamus | 8.19 ± 0.32 | |
| White Matter | 9.25 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 3200001K10Rik | CB | Cerebellum | 100 | |
| 100 | | |||
| 3200001K10Rik | CTX | Cerebral cortex | 100 | |
| 100 | | |||
| 3200001K10Rik | HIP | Hippocampal region | 100 | |
| 100 | | |||
| 3200001K10Rik | HPF | Hippocampal formation | 100 | |
| 100 | | |||
| 3200001K10Rik | HY | Hypothalamus | 100 | |
| 100 | | |||
| 3200001K10Rik | LSX | Lateral septal complex | 100 | |
| 100 | | |||
| 3200001K10Rik | MB | Midbrain | 100 | |
| 100 | | |||
| 3200001K10Rik | MY | Medulla | 100 | |
| 100 | | |||
| 3200001K10Rik | OLF | Olfactory bulb | 100 | |
| 100 | | |||
| 3200001K10Rik | P | Pons | 100 | |
| 100 | | |||
| 3200001K10Rik | PAL | Pallidum | 100 | |
| 100 | | |||
| 3200001K10Rik | RHP | Retrohippocampal region | 100 | |
| 100 | | |||
| 3200001K10Rik | sAMY | Striatum-like amygdalar nuclei | 100 | |
| 100 | | |||
| 3200001K10Rik | STR | Striatum | 100 | |
| 100 | | |||
| 3200001K10Rik | STRd | Striatum dorsal region | 100 | |
| 100 | | |||
| 3200001K10Rik | STRv | Striatum ventral region | 100 | |
| 100 | | |||
| 3200001K10Rik | TH | Thalamus | 100 | |
| 100 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00001343 | 20 | 726 | 745 | CSATPSAQVKPIVSASPPSR | Peptide Atlas |
| RBM33_HUMAN_2 | 27 | 2 | 28 | AAALGASGGAGAGDDDFDQFDKPGAER | PRIDE |