Annotation Detail for SGK223
Basic Information Top
| Gene Symbol: | SGK223 ( DKFZp761P0423,PRAGMIN ) |
|---|---|
| Gene Full Name: | - |
| Band: | 8p23.1 |
| Quick Links | Entrez ID:157285; OMIM: NA; Uniprot ID:SG223_HUMAN; ENSEMBL ID: ENSG00000182319; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.657673
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 0 / 564012 | 0 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 14 / 1939121 | 7 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 |  |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 32 / 3360307 | 9 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 4 / 48801 | 81 | |
| brain | 5 / 1100989 | 4 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 17 / 215722 | 78 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 3 / 91610 | 32 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 2 / 214812 | 9 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 4 / 280825 | 14 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 1 / 16999 | 58 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P250212
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.75 ± 0.84 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.12 ± 0.24 | |
| Basal Part of Pons | 8.7 ± 0.24 | |
| Cerebellar Cortex | 10.14 ± 0.28 | |
| Cerebellar Nuclei | 8.48 ± 0.39 | |
| Claustrum | 8.9 ± 0.45 | |
| Epithalamus | 9.24 ± 0.41 | |
| Frontal Lobe | 9.47 ± 0.56 | |
| Globus Pallidus | 7.71 ± 0.49 | |
| Hypothalamus | 8.78 ± 0.26 | |
| Insula | 9.3 ± 0.33 | |
| Limbic Lobe | 9.42 ± 0.77 | |
| Mesencephalon | 8.97 ± 0.46 | |
| Myelencephalon | 9.42 ± 0.47 | |
| Occipital Lobe | 10.06 ± 0.58 | |
| Parietal Lobe | 9.64 ± 0.47 | |
| Pontine Tegmentum | 9.62 ± 0.65 | |
| Striatum | 10.09 ± 0.73 | |
| Subthalamus | 9.8 ± 0.93 | |
| Temporal Lobe | 9.4 ± 0.55 | |
| Thalamus | 9.81 ± 0.58 | |
| White Matter | 7.17 ± 0.64 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| D8Ertd82e | CB | Cerebellum | 62.93 | |
| 85.2 | | |||
| D8Ertd82e | CTX | Cerebral cortex | 32.78 | |
| 29.61 | | |||
| D8Ertd82e | HIP | Hippocampal region | 8.33 | |
| 9.17 | | |||
| D8Ertd82e | HPF | Hippocampal formation | 13.39 | |
| 13.47 | | |||
| D8Ertd82e | HY | Hypothalamus | 3.99 | |
| 3.47 | | |||
| D8Ertd82e | LSX | Lateral septal complex | 4.19 | |
| 3.74 | | |||
| D8Ertd82e | MB | Midbrain | 4.26 | |
| 4.44 | | |||
| D8Ertd82e | MY | Medulla | 6.21 | |
| 7.31 | | |||
| D8Ertd82e | OLF | Olfactory bulb | 15.81 | |
| 13.91 | | |||
| D8Ertd82e | P | Pons | 3.59 | |
| 3.63 | | |||
| D8Ertd82e | PAL | Pallidum | 2.98 | |
| 2.43 | | |||
| D8Ertd82e | RHP | Retrohippocampal region | 20.87 | |
| 18.63 | | |||
| D8Ertd82e | sAMY | Striatum-like amygdalar nuclei | 7.84 | |
| 5.98 | | |||
| D8Ertd82e | STR | Striatum | 4.67 | |
| 3.96 | | |||
| D8Ertd82e | STRd | Striatum dorsal region | 4.03 | |
| 3.79 | | |||
| D8Ertd82e | STRv | Striatum ventral region | 5.7 | |
| 3.76 | | |||
| D8Ertd82e | TH | Thalamus | 6.05 | |
| 6.02 | |