Annotation Detail for C8orf42
Basic Information Top
| Gene Symbol: | C8orf42 ( DKFZp686J15216,INM01,TDRP ) |
|---|---|
| Gene Full Name: | chromosome 8 open reading frame 42 |
| Band: | 8p23.3 |
| Quick Links | Entrez ID:157695; OMIM: NA; Uniprot ID:CH042_HUMAN; ENSEMBL ID: ENSG00000180190; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.289293
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 8 / 70761 | 113 |  |
| blastocyst | 7 / 62319 | 112 | |
| fetus | 28 / 564012 | 49 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 63 / 1939121 | 32 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 1 / 17475 | 57 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 2 / 82823 | 24 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 1 / 136302 | 7 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 121 / 3360307 | 36 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 8 / 1100989 | 7 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 18 / 215722 | 83 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 6 / 211054 | 28 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 5 / 207743 | 24 | |
| lung | 5 / 336974 | 14 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 28 / 280825 | 99 | |
| prostate | 9 / 189345 | 47 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 4 / 330442 | 12 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 6 / 232878 | 25 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_7608_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.99 ± 0.3 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.92 ± 0.08 | |
| Basal Part of Pons | 6.24 ± 0.35 | |
| Cerebellar Cortex | 6.53 ± 0.27 | |
| Cerebellar Nuclei | 6.7 ± 0.27 | |
| Claustrum | 6.99 ± 0.52 | |
| Epithalamus | 7.27 ± 0.56 | |
| Frontal Lobe | 6.55 ± 0.36 | |
| Globus Pallidus | 6.96 ± 0.19 | |
| Hypothalamus | 6.72 ± 0.26 | |
| Insula | 6.61 ± 0.34 | |
| Limbic Lobe | 6.83 ± 0.41 | |
| Mesencephalon | 6.79 ± 0.44 | |
| Myelencephalon | 6.77 ± 0.4 | |
| Occipital Lobe | 6.92 ± 0.38 | |
| Parietal Lobe | 6.7 ± 0.46 | |
| Pontine Tegmentum | 6.74 ± 0.36 | |
| Striatum | 7.4 ± 0.44 | |
| Subthalamus | 6.59 ± 0.13 | |
| Temporal Lobe | 6.62 ± 0.34 | |
| Thalamus | 6.53 ± 0.31 | |
| White Matter | 6.54 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 2610019F03Rik | CB | Cerebellum | 14.83 | |
| 17.78 | | |||
| 2610019F03Rik | CTX | Cerebral cortex | 22.29 | |
| 15.38 | | |||
| 2610019F03Rik | HIP | Hippocampal region | 16.15 | |
| 15.38 | | |||
| 2610019F03Rik | HPF | Hippocampal formation | 17.74 | |
| 15.02 | | |||
| 2610019F03Rik | HY | Hypothalamus | 6.98 | |
| 5.77 | | |||
| 2610019F03Rik | LSX | Lateral septal complex | 13.89 | |
| 9.97 | | |||
| 2610019F03Rik | MB | Midbrain | 12.68 | |
| 13.29 | | |||
| 2610019F03Rik | MY | Medulla | 21.57 | |
| 29.3 | | |||
| 2610019F03Rik | OLF | Olfactory bulb | 21.97 | |
| 17.16 | | |||
| 2610019F03Rik | P | Pons | 15.42 | |
| 19.57 | | |||
| 2610019F03Rik | PAL | Pallidum | 12.08 | |
| 10.67 | | |||
| 2610019F03Rik | RHP | Retrohippocampal region | 21.67 | |
| 15.59 | | |||
| 2610019F03Rik | sAMY | Striatum-like amygdalar nuclei | 14.47 | |
| 10.25 | | |||
| 2610019F03Rik | STR | Striatum | 43.43 | |
| 30.68 | | |||
| 2610019F03Rik | STRd | Striatum dorsal region | 52.5 | |
| 37.62 | | |||
| 2610019F03Rik | STRv | Striatum ventral region | 40.21 | |
| 26.97 | | |||
| 2610019F03Rik | TH | Thalamus | 11.52 | |
| 9.85 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00498680 | 28 | 114 | 141 | LALEDISADPEDTVGGHPSWSGWEDDAK | Peptide Atlas |