Annotation Detail for USP54
Basic Information Top
| Gene Symbol: | USP54 ( C10orf29,FLJ37318,bA137L10.3,bA137L10.4 ) |
|---|---|
| Gene Full Name: | ubiquitin specific peptidase 54 |
| Band: | 10q22.2 |
| Quick Links | Entrez ID:159195; OMIM: NA; Uniprot ID:UBP54_HUMAN; ENSEMBL ID: ENSG00000166348; HGNC ID: 23513 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.657355
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 4 / 70761 | 56 |  |
| blastocyst | 5 / 62319 | 80 | |
| fetus | 4 / 564012 | 7 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 85 / 1939121 | 43 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 13 / 114246 | 113 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 4 / 119369 | 33 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 6 / 106883 | 56 | |
| head and neck tumor | 17 / 136302 | 124 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 75 / 3360307 | 22 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 | |
| prostate cancer | 11 / 102680 | 107 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 5 / 124949 | 40 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 4 / 90257 | 44 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 3 / 40015 | 74 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 48 / 1100989 | 43 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 12 / 215722 | 55 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 15 / 234472 | 63 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 6 / 24145 | 248 |  |
| liver | 3 / 207743 | 14 | |
| lung | 6 / 336974 | 17 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 4 / 91610 | 43 | |
| mammary gland | 7 / 153271 | 45 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 16 / 189345 | 84 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 3 / 330442 | 9 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 10 / 47473 | 210 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P355536
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.11 ± 0.48 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.87 ± 0.44 | |
| Basal Part of Pons | 9.57 ± 0.51 | |
| Cerebellar Cortex | 9.36 ± 0.22 | |
| Cerebellar Nuclei | 10.88 ± 0.54 | |
| Claustrum | 8.99 ± 0.39 | |
| Epithalamus | 9.85 ± 0.64 | |
| Frontal Lobe | 9.61 ± 0.8 | |
| Globus Pallidus | 11.22 ± 0.33 | |
| Hypothalamus | 9.33 ± 0.81 | |
| Insula | 9.18 ± 0.24 | |
| Limbic Lobe | 9.26 ± 0.55 | |
| Mesencephalon | 9.88 ± 0.75 | |
| Myelencephalon | 9.72 ± 0.6 | |
| Occipital Lobe | 9.72 ± 0.48 | |
| Parietal Lobe | 9.63 ± 0.5 | |
| Pontine Tegmentum | 9.82 ± 0.49 | |
| Striatum | 10.18 ± 0.59 | |
| Subthalamus | 10.18 ± 0.35 | |
| Temporal Lobe | 9.36 ± 0.52 | |
| Thalamus | 10.03 ± 0.36 | |
| White Matter | 12.11 ± 0.27 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Usp54 | CB | Cerebellum | 13.51 | |
| 12.06 | | |||
| Usp54 | CTX | Cerebral cortex | 7.73 | |
| 5.08 | | |||
| Usp54 | HIP | Hippocampal region | 9.21 | |
| 7.5 | | |||
| Usp54 | HPF | Hippocampal formation | 9.77 | |
| 7.32 | | |||
| Usp54 | HY | Hypothalamus | 5.55 | |
| 3.39 | | |||
| Usp54 | LSX | Lateral septal complex | 5.99 | |
| 3.68 | | |||
| Usp54 | MB | Midbrain | 12.54 | |
| 8.85 | | |||
| Usp54 | MY | Medulla | 17.52 | |
| 13.82 | | |||
| Usp54 | OLF | Olfactory bulb | 15.5 | |
| 11.42 | | |||
| Usp54 | P | Pons | 15.28 | |
| 10.84 | | |||
| Usp54 | PAL | Pallidum | 8.81 | |
| 6.07 | | |||
| Usp54 | RHP | Retrohippocampal region | 10.99 | |
| 7.24 | | |||
| Usp54 | sAMY | Striatum-like amygdalar nuclei | 8.74 | |
| 5.51 | | |||
| Usp54 | STR | Striatum | 8.81 | |
| 5.69 | | |||
| Usp54 | STRd | Striatum dorsal region | 11.2 | |
| 7.56 | | |||
| Usp54 | STRv | Striatum ventral region | 2.9 | |
| 1.54 | | |||
| Usp54 | TH | Thalamus | 8.59 | |
| 5.82 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00433215 | 13 | 832 | 844 | LALHGASCSTHSR | Peptide Atlas |