Annotation Detail for DACH1
Basic Information Top
Gene Symbol: | DACH1 ( DACH,FLJ10138 ) |
---|---|
Gene Full Name: | dachshund homolog 1 (Drosophila) |
Band: | 13q21.33 |
Quick Links | Entrez ID:1602; OMIM: 603803; Uniprot ID:DACH1_HUMAN; ENSEMBL ID: ENSG00000165659; HGNC ID: 2663 |
Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.129452
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
embryoid body | 3 / 70761 | 42 | |
blastocyst | 0 / 62319 | 0 | |
fetus | 23 / 564012 | 40 | |
neonate | 0 / 31097 | 0 | |
infant | 2 / 23620 | 84 | |
juvenile | 0 / 55556 | 0 | |
adult | 28 / 1939121 | 14 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adrenal tumor | 1 / 12794 | 78 | |
bladder carcinoma | 0 / 17475 | 0 | |
breast (mammary gland) tumor | 0 / 94178 | 0 | |
cervical tumor | 0 / 34366 | 0 | |
chondrosarcoma | 0 / 82823 | 0 | |
colorectal tumor | 2 / 114246 | 17 | |
esophageal tumor | 0 / 17290 | 0 | |
gastrointestinal tumor | 3 / 119369 | 25 | |
germ cell tumor | 0 / 263845 | 0 | |
glioma | 0 / 106883 | 0 | |
head and neck tumor | 0 / 136302 | 0 | |
kidney tumor | 2 / 68959 | 29 | |
leukemia | 1 / 95842 | 10 | |
liver tumor | 0 / 96359 | 0 | |
lung tumor | 0 / 103127 | 0 | |
lymphoma | 0 / 71755 | 0 | |
non-neoplasia | 3 / 97250 | 30 | |
normal | 74 / 3360307 | 22 | |
ovarian tumor | 0 / 76682 | 0 | |
pancreatic tumor | 2 / 104616 | 19 | |
primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
prostate cancer | 0 / 102680 | 0 | |
retinoblastoma | 4 / 46356 | 86 | |
skin tumor | 0 / 124949 | 0 | |
soft tissue/muscle tissue tumor | 10 / 125191 | 79 | |
uterine tumor | 2 / 90257 | 22 |
Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
---|---|---|---|
adipose tissue | 0 / 13106 | 0 | |
adrenal gland | 1 / 33197 | 30 | |
ascites | 0 / 40015 | 0 | |
bladder | 0 / 29757 | 0 | |
blood | 1 / 123478 | 8 | |
bone | 0 / 71655 | 0 | |
bone marrow | 0 / 48801 | 0 | |
brain | 10 / 1100989 | 9 | |
cervix | 0 / 48171 | 0 | |
connective tissue | 5 / 149255 | 33 | |
ear | 0 / 16212 | 0 | |
embryonic tissue | 6 / 215722 | 27 | |
esophagus | 0 / 20209 | 0 | |
eye | 14 / 211054 | 66 | |
heart | 1 / 89626 | 11 | |
intestine | 5 / 234472 | 21 | |
kidney | 8 / 211777 | 37 | |
larynx | 1 / 24145 | 41 | |
liver | 0 / 207743 | 0 | |
lung | 9 / 336974 | 26 | |
lymph | 0 / 44270 | 0 | |
lymph node | 0 / 91610 | 0 | |
mammary gland | 0 / 153271 | 0 | |
mouth | 0 / 67052 | 0 | |
muscle | 2 / 107715 | 18 | |
nerve | 0 / 15768 | 0 | |
ovary | 0 / 102051 | 0 | |
pancreas | 6 / 214812 | 27 | |
parathyroid | 0 / 20539 | 0 | |
pharynx | 0 / 41328 | 0 | |
pituitary gland | 0 / 16585 | 0 | |
placenta | 4 / 280825 | 14 | |
prostate | 2 / 189345 | 10 | |
salivary gland | 0 / 20155 | 0 | |
skin | 0 / 210574 | 0 | |
spleen | 3 / 53952 | 55 | |
stomach | 0 / 96619 | 0 | |
testis | 12 / 330442 | 36 | |
thymus | 0 / 81131 | 0 | |
thyroid | 0 / 47473 | 0 | |
tonsil | 0 / 16999 | 0 | |
trachea | 0 / 52413 | 0 | |
umbilical cord | 0 / 13680 | 0 | |
uterus | 7 / 232878 | 30 | |
vascular | 0 / 51780 | 0 |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 205472_s_at
Cell line | Expression level | Expression bar |
---|---|---|
721_B_lymphoblasts | 7.3 | |
Adipocyte | 6.45 | |
AdrenalCortex | 8.1 | |
Adrenalgland | 6.05 | |
Amygdala | 6.6 | |
Appendix | 7.55 | |
AtrioventricularNode | 6.25 | |
BDCA4+_DentriticCells | 9.7 | |
Bonemarrow | 7 | |
BronchialEpithelialCells | 6.3 | |
CD105+_Endothelial | 6.55 | |
CD14+_Monocytes | 7 | |
CD19+_BCells(neg._sel.) | 6.85 | |
CD33+_Myeloid | 8.05 | |
CD34+ | 8.85 | |
CD4+_Tcells | 6.85 | |
CD56+_NKCells | 7.4 | |
CD71+_EarlyErythroid | 6.35 | |
CD8+_Tcells | 5.9 | |
CardiacMyocytes | 10.45 | |
Caudatenucleus | 6 | |
Cerebellum | 5.45 | |
CerebellumPeduncles | 7.95 | |
CiliaryGanglion | 5.45 | |
CingulateCortex | 7 | |
Colorectaladenocarcinoma | 6.6 | |
DorsalRootGanglion | 5.55 | |
FetalThyroid | 6.55 | |
Fetalbrain | 6.3 | |
Fetalliver | 5.8 | |
Fetallung | 5 | |
GlobusPallidus | 5.2 | |
Heart | 9.55 | |
Hypothalamus | 6.85 | |
Kidney | 5.9 | |
Leukemia_chronicMyelogenousK-562 | 5.95 | |
Leukemia_promyelocytic-HL-60 | 5.9 | |
Leukemialymphoblastic(MOLT-4) | 5.15 | |
Liver | 9.6 | |
Lung | 7.3 | |
Lymphnode | 5.4 | |
Lymphoma_burkitts(Daudi) | 8.8 | |
Lymphoma_burkitts(Raji) | 10 | |
MedullaOblongata | 6.1 | |
OccipitalLobe | 5.9 | |
OlfactoryBulb | 5.2 | |
Ovary | 4.8 | |
Pancreas | 5.5 | |
PancreaticIslet | 7.15 | |
ParietalLobe | 7.4 | |
Pituitary | 7.65 | |
Placenta | 6.5 | |
Pons | 6.55 | |
PrefrontalCortex | 8.15 | |
Prostate | 8.55 | |
Salivarygland | 5.55 | |
SkeletalMuscle | 9.55 | |
Skin | 5.85 | |
SmoothMuscle | 7.4 | |
Spinalcord | 7.1 | |
SubthalamicNucleus | 6.3 | |
SuperiorCervicalGanglion | 9.15 | |
TemporalLobe | 6.25 | |
Testis | 5.7 | |
TestisGermCell | 5.55 | |
TestisIntersitial | 5.65 | |
TestisLeydigCell | 6.9 | |
TestisSeminiferousTubule | 5.65 | |
Thalamus | 6.95 | |
Thymus | 5.05 | |
Thyroid | 7.95 | |
Tongue | 7.25 | |
Tonsil | 6.55 | |
Trachea | 5.45 | |
TrigeminalGanglion | 13.05 | |
Uterus | 5.2 | |
UterusCorpus | 6.65 | |
WholeBlood | 7.15 | |
Wholebrain | 5.45 | |
colon | 6.65 | |
pineal_day | 39.42 | |
pineal_night | 62.36 | |
retina | 8 | |
small_intestine | 6.35 |
Human Whole Brain Microarrayview in Allen Brain Atlas
- Probe name: CUST_9782_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue | Expression(mean ± stddev) | Expression Bar |
---|---|---|
Amygdala | 7.09 ± 0.71 | |
Basal Forebrain | 8.17 ± 0.45 | |
Basal Part of Pons | 8.33 ± 0.28 | |
Cerebellar Cortex | 7.07 ± 0.22 | |
Cerebellar Nuclei | 8.69 ± 0.34 | |
Claustrum | 7.82 ± 0.65 | |
Epithalamus | 7.33 ± 1.18 | |
Frontal Lobe | 7.98 ± 0.51 | |
Globus Pallidus | 7.01 ± 0.4 | |
Hypothalamus | 9 ± 0.6 | |
Insula | 7.73 ± 0.43 | |
Limbic Lobe | 6.99 ± 0.72 | |
Mesencephalon | 7.73 ± 0.97 | |
Myelencephalon | 7.67 ± 0.94 | |
Occipital Lobe | 7.05 ± 0.71 | |
Parietal Lobe | 7.48 ± 0.63 | |
Pontine Tegmentum | 7.65 ± 0.67 | |
Striatum | 9.84 ± 0.7 | |
Subthalamus | 7.35 ± 0.26 | |
Temporal Lobe | 7.33 ± 0.54 | |
Thalamus | 7.26 ± 0.46 | |
White Matter | 5.36 ± 0.41 |
Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
---|---|---|---|---|
Dach1 | CB | Cerebellum | 31.52 | |
80.23 | ||||
Dach1 | CTX | Cerebral cortex | 22.43 | |
17.31 | ||||
Dach1 | HIP | Hippocampal region | 17.53 | |
21.59 | ||||
Dach1 | HPF | Hippocampal formation | 20.38 | |
21.45 | ||||
Dach1 | HY | Hypothalamus | 20.46 | |
17.38 | ||||
Dach1 | LSX | Lateral septal complex | 17.61 | |
14.6 | ||||
Dach1 | MB | Midbrain | 20.13 | |
20.61 | ||||
Dach1 | MY | Medulla | 36.19 | |
41.81 | ||||
Dach1 | OLF | Olfactory bulb | 44.14 | |
43.93 | ||||
Dach1 | P | Pons | 29.27 | |
30.56 | ||||
Dach1 | PAL | Pallidum | 23.41 | |
22.7 | ||||
Dach1 | RHP | Retrohippocampal region | 25.49 | |
21.98 | ||||
Dach1 | sAMY | Striatum-like amygdalar nuclei | 27.64 | |
24.71 | ||||
Dach1 | STR | Striatum | 98.68 | |
97.81 | ||||
Dach1 | STRd | Striatum dorsal region | 100 | |
100 | ||||
Dach1 | STRv | Striatum ventral region | 66.42 | |
51.37 | ||||
Dach1 | TH | Thalamus | 13.31 | |
13.15 |