Annotation Detail for SLFN5
Basic Information Top
| Gene Symbol: | SLFN5 ( MGC150611,MGC150612,MGC19764 ) |
|---|---|
| Gene Full Name: | schlafen family member 5 |
| Band: | 17q12 |
| Quick Links | Entrez ID:162394; OMIM: NA; Uniprot ID:SLFN5_HUMAN; ENSEMBL ID: ENSG00000166750; HGNC ID: 28286 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.709347
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 39 / 1939121 | 20 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 4 / 263845 | 15 | |
| glioma | 4 / 106883 | 37 | |
| head and neck tumor | 10 / 136302 | 73 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 2 / 103127 | 19 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 62 / 3360307 | 18 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 1 / 104616 | 9 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 4 / 124949 | 32 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 16 / 1100989 | 14 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 6 / 215722 | 27 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 1 / 89626 | 11 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 3 / 211777 | 14 | |
| larynx | 1 / 24145 | 41 | |
| liver | 3 / 207743 | 14 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 2 / 102051 | 19 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 4 / 41328 | 96 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 5 / 210574 | 23 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 1 / 330442 | 3 | |
| thymus | 8 / 81131 | 98 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 4 / 52413 | 76 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: CUST_13508_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.64 ± 0.7 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.25 ± 0.55 | |
| Basal Part of Pons | 4.67 ± 0.47 | |
| Cerebellar Cortex | 4.2 ± 0.42 | |
| Cerebellar Nuclei | 4.73 ± 0.63 | |
| Claustrum | 4.32 ± 0.76 | |
| Epithalamus | 4.67 ± 0.4 | |
| Frontal Lobe | 4.41 ± 0.54 | |
| Globus Pallidus | 5.52 ± 0.24 | |
| Hypothalamus | 4.19 ± 0.74 | |
| Insula | 4.38 ± 0.42 | |
| Limbic Lobe | 4.69 ± 0.55 | |
| Mesencephalon | 4.51 ± 0.66 | |
| Myelencephalon | 4.59 ± 0.57 | |
| Occipital Lobe | 4.74 ± 0.54 | |
| Parietal Lobe | 4.61 ± 0.53 | |
| Pontine Tegmentum | 4.42 ± 0.55 | |
| Striatum | 4.51 ± 0.53 | |
| Subthalamus | 4.25 ± 0.48 | |
| Temporal Lobe | 4.43 ± 0.47 | |
| Thalamus | 4.56 ± 0.47 | |
| White Matter | 6.27 ± 0.46 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Slfn5 | CB | Cerebellum | 25.22 | |
| 27.17 | | |||
| Slfn5 | CTX | Cerebral cortex | 80.87 | |
| 58.97 | | |||
| Slfn5 | HIP | Hippocampal region | 37.59 | |
| 44.57 | | |||
| Slfn5 | HPF | Hippocampal formation | 42.43 | |
| 41.53 | | |||
| Slfn5 | HY | Hypothalamus | 36.73 | |
| 27.42 | | |||
| Slfn5 | LSX | Lateral septal complex | 25.66 | |
| 17.87 | | |||
| Slfn5 | MB | Midbrain | 35.86 | |
| 28.93 | | |||
| Slfn5 | MY | Medulla | 37.11 | |
| 34.58 | | |||
| Slfn5 | OLF | Olfactory bulb | 69.55 | |
| 56.09 | | |||
| Slfn5 | P | Pons | 38.59 | |
| 32.7 | | |||
| Slfn5 | PAL | Pallidum | 31.72 | |
| 26.04 | | |||
| Slfn5 | RHP | Retrohippocampal region | 51.71 | |
| 38.33 | | |||
| Slfn5 | sAMY | Striatum-like amygdalar nuclei | 34.36 | |
| 24.89 | | |||
| Slfn5 | STR | Striatum | 34.49 | |
| 24.99 | | |||
| Slfn5 | STRd | Striatum dorsal region | 31.64 | |
| 22.51 | | |||
| Slfn5 | STRv | Striatum ventral region | 50.8 | |
| 37.21 | | |||
| Slfn5 | TH | Thalamus | 52.03 | |
| 39.86 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00487100 | 12 | 72 | 83 | HGVGLDVPPIFR | Peptide Atlas |