Annotation Detail for C18orf54
Basic Information Top
| Gene Symbol: | C18orf54 ( LAS2,MGC33382 ) |
|---|---|
| Gene Full Name: | chromosome 18 open reading frame 54 |
| Band: | 18q21.2 |
| Quick Links | Entrez ID:162681; OMIM: 613258; Uniprot ID:CR054_HUMAN; ENSEMBL ID: ENSG00000166845; HGNC ID: 13796 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.208701
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 5 / 70761 | 70 |  |
| blastocyst | 4 / 62319 | 64 | |
| fetus | 7 / 564012 | 12 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 22 / 1939121 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 3 / 114246 | 26 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 2 / 263845 | 7 |  |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 2 / 97250 | 20 | |
| normal | 57 / 3360307 | 16 | |
| ovarian tumor | 2 / 76682 | 26 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 3 / 123478 | 24 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 4 / 1100989 | 3 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 11 / 215722 | 50 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 0 / 89626 | 0 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 3 / 207743 | 14 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 10 / 91610 | 109 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 10 / 280825 | 35 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 18 / 330442 | 54 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 4 / 232878 | 17 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: A_23_P300797
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 4.05 ± 0.82 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 4.89 ± 0.8 | |
| Basal Part of Pons | 4.61 ± 0.78 | |
| Cerebellar Cortex | 4.53 ± 0.37 | |
| Cerebellar Nuclei | 5.42 ± 0.55 | |
| Claustrum | 4.57 ± 0.84 | |
| Epithalamus | 4.88 ± 0.43 | |
| Frontal Lobe | 4.48 ± 0.71 | |
| Globus Pallidus | 5.8 ± 0.42 | |
| Hypothalamus | 4.42 ± 0.53 | |
| Insula | 4.34 ± 0.61 | |
| Limbic Lobe | 4.22 ± 0.61 | |
| Mesencephalon | 4.6 ± 0.79 | |
| Myelencephalon | 4.56 ± 0.63 | |
| Occipital Lobe | 4.48 ± 0.68 | |
| Parietal Lobe | 4.4 ± 0.73 | |
| Pontine Tegmentum | 4.63 ± 0.56 | |
| Striatum | 4.65 ± 0.59 | |
| Subthalamus | 4.85 ± 0.51 | |
| Temporal Lobe | 4.35 ± 0.57 | |
| Thalamus | 4.8 ± 0.54 | |
| White Matter | 7.34 ± 0.45 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4930503L19Rik | CB | Cerebellum | 13.97 | |
| 16.1 | | |||
| 4930503L19Rik | CTX | Cerebral cortex | 17.42 | |
| 13.39 | | |||
| 4930503L19Rik | HIP | Hippocampal region | 10.31 | |
| 9.59 | | |||
| 4930503L19Rik | HPF | Hippocampal formation | 11.07 | |
| 9.14 | | |||
| 4930503L19Rik | HY | Hypothalamus | 7.1 | |
| 5.37 | | |||
| 4930503L19Rik | LSX | Lateral septal complex | 2.69 | |
| 2.21 | | |||
| 4930503L19Rik | MB | Midbrain | 9.53 | |
| 8.6 | | |||
| 4930503L19Rik | MY | Medulla | 18.46 | |
| 17.2 | | |||
| 4930503L19Rik | OLF | Olfactory bulb | 25.26 | |
| 19.84 | | |||
| 4930503L19Rik | P | Pons | 14.57 | |
| 12.76 | | |||
| 4930503L19Rik | PAL | Pallidum | 6.59 | |
| 6.08 | | |||
| 4930503L19Rik | RHP | Retrohippocampal region | 13.12 | |
| 8.89 | | |||
| 4930503L19Rik | sAMY | Striatum-like amygdalar nuclei | 4.81 | |
| 3.37 | | |||
| 4930503L19Rik | STR | Striatum | 6.25 | |
| 4.73 | | |||
| 4930503L19Rik | STRd | Striatum dorsal region | 5.83 | |
| 4.72 | | |||
| 4930503L19Rik | STRv | Striatum ventral region | 9.93 | |
| 6.39 | | |||
| 4930503L19Rik | TH | Thalamus | 7.85 | |
| 6.87 | |