Annotation Detail for C1orf55
Basic Information Top
| Gene Symbol: | C1orf55 ( FLJ35382,RP4-671D7.1,dJ671D7.1 ) |
|---|---|
| Gene Full Name: | chromosome 1 open reading frame 55 |
| Band: | 1q42.12 |
| Quick Links | Entrez ID:163859; OMIM: NA; Uniprot ID:CA055_HUMAN; ENSEMBL ID: ENSG00000143751; HGNC ID: |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.520192
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 7 / 564012 | 12 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 33 / 1939121 | 17 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 5 / 263845 | 18 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 2 / 136302 | 14 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 2 / 96359 | 20 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 46 / 3360307 | 13 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 1 / 40015 | 24 | |
| bladder | 2 / 29757 | 67 | |
| blood | 2 / 123478 | 16 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 4 / 48171 | 83 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 0 / 24145 | 0 | |
| liver | 7 / 207743 | 33 | |
| lung | 0 / 336974 | 0 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 5 / 107715 | 46 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 2 / 280825 | 7 | |
| prostate | 7 / 189345 | 36 | |
| salivary gland | 4 / 20155 | 198 | |
| skin | 1 / 210574 | 4 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 1 / 96619 | 10 | |
| testis | 10 / 330442 | 30 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 2 / 47473 | 42 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 3 / 232878 | 12 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_5453_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 6.17 ± 0.33 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.3 ± 0.22 | |
| Basal Part of Pons | 5.56 ± 0.46 | |
| Cerebellar Cortex | 5.96 ± 0.26 | |
| Cerebellar Nuclei | 5.96 ± 0.31 | |
| Claustrum | 5.98 ± 0.38 | |
| Epithalamus | 6.08 ± 0.31 | |
| Frontal Lobe | 5.79 ± 0.35 | |
| Globus Pallidus | 6.62 ± 0.28 | |
| Hypothalamus | 5.9 ± 0.33 | |
| Insula | 5.84 ± 0.33 | |
| Limbic Lobe | 5.89 ± 0.35 | |
| Mesencephalon | 6 ± 0.33 | |
| Myelencephalon | 5.91 ± 0.39 | |
| Occipital Lobe | 5.93 ± 0.35 | |
| Parietal Lobe | 5.93 ± 0.38 | |
| Pontine Tegmentum | 5.98 ± 0.33 | |
| Striatum | 5.98 ± 0.41 | |
| Subthalamus | 5.61 ± 0.23 | |
| Temporal Lobe | 5.84 ± 0.31 | |
| Thalamus | 5.93 ± 0.39 | |
| White Matter | 7.09 ± 0.36 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| BC031781 | CB | Cerebellum | 5.9 | |
| 6.09 | | |||
| BC031781 | CTX | Cerebral cortex | 7.46 | |
| 5.24 | | |||
| BC031781 | HIP | Hippocampal region | 8.88 | |
| 8.64 | | |||
| BC031781 | HPF | Hippocampal formation | 6.35 | |
| 5.73 | | |||
| BC031781 | HY | Hypothalamus | 0.1 | |
| 0.09 | | |||
| BC031781 | LSX | Lateral septal complex | 1.31 | |
| 0.93 | | |||
| BC031781 | MB | Midbrain | 0.78 | |
| 0.78 | | |||
| BC031781 | MY | Medulla | 1.68 | |
| 1.64 | | |||
| BC031781 | OLF | Olfactory bulb | 6.22 | |
| 5.73 | | |||
| BC031781 | P | Pons | 0.65 | |
| 0.71 | | |||
| BC031781 | PAL | Pallidum | 1.24 | |
| 0.94 | | |||
| BC031781 | RHP | Retrohippocampal region | 2.08 | |
| 1.53 | | |||
| BC031781 | sAMY | Striatum-like amygdalar nuclei | 2.22 | |
| 1.4 | | |||
| BC031781 | STR | Striatum | 1.67 | |
| 1.13 | | |||
| BC031781 | STRd | Striatum dorsal region | 1.54 | |
| 1.04 | | |||
| BC031781 | STRv | Striatum ventral region | 2.18 | |
| 1.45 | | |||
| BC031781 | TH | Thalamus | 2.08 | |
| 1.71 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00497359 | 21 | 271 | 291 | VVNTDHGSPEQLQIPVTDSGR | Peptide Atlas |