Annotation Detail for CNST
Basic Information Top
| Gene Symbol: | CNST ( C1orf71,FLJ32001,MGC18089 ) |
|---|---|
| Gene Full Name: | consortin, connexin sorting protein |
| Band: | 1q44 |
| Quick Links | Entrez ID:163882; OMIM: 613439; Uniprot ID:CNST_HUMAN; ENSEMBL ID: ENSG00000162852; HGNC ID: 26486 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.368353
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 39 / 564012 | 69 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 1 / 55556 | 17 | |
| adult | 82 / 1939121 | 42 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 5 / 94178 | 53 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 5 / 82823 | 60 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 20 / 263845 | 75 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 4 / 95842 | 41 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 207 / 3360307 | 61 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 7 / 125680 | 55 | |
| prostate cancer | 1 / 102680 | 9 |  |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 1 / 29757 | 33 | |
| blood | 2 / 123478 | 16 | |
| bone | 3 / 71655 | 41 | |
| bone marrow | 3 / 48801 | 61 | |
| brain | 98 / 1100989 | 89 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 3 / 215722 | 13 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 8 / 211054 | 37 | |
| heart | 3 / 89626 | 33 | |
| intestine | 4 / 234472 | 17 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 6 / 207743 | 28 | |
| lung | 10 / 336974 | 29 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 8 / 91610 | 87 | |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 8 / 67052 | 119 | |
| muscle | 3 / 107715 | 27 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 12 / 280825 | 42 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 23 / 210574 | 109 | |
| spleen | 2 / 53952 | 37 | |
| stomach | 2 / 96619 | 20 | |
| testis | 24 / 330442 | 72 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 2 / 16999 | 117 | |
| trachea | 22 / 52413 | 419 |  |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 13 / 232878 | 55 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P405175
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.29 ± 0.21 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.71 ± 0.34 | |
| Basal Part of Pons | 9.56 ± 0.2 | |
| Cerebellar Cortex | 9.71 ± 0.16 | |
| Cerebellar Nuclei | 9.3 ± 0.32 | |
| Claustrum | 10.03 ± 0.21 | |
| Epithalamus | 9.21 ± 0.33 | |
| Frontal Lobe | 9.64 ± 0.38 | |
| Globus Pallidus | 8.38 ± 0.24 | |
| Hypothalamus | 10.28 ± 0.22 | |
| Insula | 9.65 ± 0.21 | |
| Limbic Lobe | 9.47 ± 0.36 | |
| Mesencephalon | 9.75 ± 0.54 | |
| Myelencephalon | 9.56 ± 0.44 | |
| Occipital Lobe | 9.94 ± 0.29 | |
| Parietal Lobe | 9.78 ± 0.32 | |
| Pontine Tegmentum | 9.59 ± 0.44 | |
| Striatum | 9.62 ± 0.28 | |
| Subthalamus | 10 ± 0.05 | |
| Temporal Lobe | 9.56 ± 0.32 | |
| Thalamus | 9.57 ± 0.26 | |
| White Matter | 8.35 ± 0.42 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 9630058J23Rik | CB | Cerebellum | 14.29 | |
| 15.96 | | |||
| 9630058J23Rik | CTX | Cerebral cortex | 9.17 | |
| 6.79 | | |||
| 9630058J23Rik | HIP | Hippocampal region | 11.05 | |
| 10.88 | | |||
| 9630058J23Rik | HPF | Hippocampal formation | 10.73 | |
| 9.46 | | |||
| 9630058J23Rik | HY | Hypothalamus | 6.62 | |
| 5.16 | | |||
| 9630058J23Rik | LSX | Lateral septal complex | 2.44 | |
| 1.48 | | |||
| 9630058J23Rik | MB | Midbrain | 7.34 | |
| 7.55 | | |||
| 9630058J23Rik | MY | Medulla | 12.23 | |
| 13.54 | | |||
| 9630058J23Rik | OLF | Olfactory bulb | 13.45 | |
| 10.77 | | |||
| 9630058J23Rik | P | Pons | 8.66 | |
| 10.39 | | |||
| 9630058J23Rik | PAL | Pallidum | 1.82 | |
| 2.57 | | |||
| 9630058J23Rik | RHP | Retrohippocampal region | 10.55 | |
| 7.8 | | |||
| 9630058J23Rik | sAMY | Striatum-like amygdalar nuclei | 1.36 | |
| 0.87 | | |||
| 9630058J23Rik | STR | Striatum | 31.03 | |
| 22.09 | | |||
| 9630058J23Rik | STRd | Striatum dorsal region | 46.49 | |
| 33.96 | | |||
| 9630058J23Rik | STRv | Striatum ventral region | 13.42 | |
| 8.51 | | |||
| 9630058J23Rik | TH | Thalamus | 12.47 | |
| 11.39 | |