Annotation Detail for UBXN2A
Basic Information Top
| Gene Symbol: | UBXN2A ( MGC138202,UBXD4 ) |
|---|---|
| Gene Full Name: | UBX domain protein 2A |
| Band: | 2p23.3 |
| Quick Links | Entrez ID:165324; OMIM: NA; Uniprot ID:UBX2A_HUMAN; ENSEMBL ID: ENSG00000173960; HGNC ID: 27265 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.591576
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 6 / 564012 | 10 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 2 / 94178 | 21 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 3 / 263845 | 11 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 5 / 136302 | 36 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 1 / 96359 | 10 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 24 / 3360307 | 7 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 2 / 48801 | 40 | |
| brain | 2 / 1100989 | 1 |  |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 2 / 211054 | 9 | |
| heart | 0 / 89626 | 0 | |
| intestine | 2 / 234472 | 8 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 1 / 24145 | 41 | |
| liver | 1 / 207743 | 4 | |
| lung | 3 / 336974 | 8 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 2 / 153271 | 13 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 3 / 280825 | 10 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 6 / 210574 | 28 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 5 / 330442 | 15 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 4 / 47473 | 84 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_6181_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 9.02 ± 0.35 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 9.46 ± 0.27 | |
| Basal Part of Pons | 8.84 ± 0.34 | |
| Cerebellar Cortex | 9.25 ± 0.24 | |
| Cerebellar Nuclei | 9.24 ± 0.35 | |
| Claustrum | 9.3 ± 0.24 | |
| Epithalamus | 9.37 ± 0.3 | |
| Frontal Lobe | 8.91 ± 0.38 | |
| Globus Pallidus | 10.05 ± 0.31 | |
| Hypothalamus | 9.46 ± 0.28 | |
| Insula | 8.84 ± 0.28 | |
| Limbic Lobe | 8.88 ± 0.5 | |
| Mesencephalon | 9.34 ± 0.29 | |
| Myelencephalon | 9.1 ± 0.41 | |
| Occipital Lobe | 9.26 ± 0.35 | |
| Parietal Lobe | 9.09 ± 0.39 | |
| Pontine Tegmentum | 9.16 ± 0.26 | |
| Striatum | 9.12 ± 0.48 | |
| Subthalamus | 9.34 ± 0.03 | |
| Temporal Lobe | 8.83 ± 0.36 | |
| Thalamus | 9.16 ± 0.28 | |
| White Matter | 10.3 ± 0.37 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ubxd4 | CB | Cerebellum | 6.87 | |
| 10.4 | | |||
| Ubxd4 | CTX | Cerebral cortex | 17.23 | |
| 15.53 | | |||
| Ubxd4 | HIP | Hippocampal region | 7.97 | |
| 8.82 | | |||
| Ubxd4 | HPF | Hippocampal formation | 7.64 | |
| 7.88 | | |||
| Ubxd4 | HY | Hypothalamus | 9.06 | |
| 8.02 | | |||
| Ubxd4 | LSX | Lateral septal complex | 6.16 | |
| 5.96 | | |||
| Ubxd4 | MB | Midbrain | 6.42 | |
| 8.43 | | |||
| Ubxd4 | MY | Medulla | 6.78 | |
| 10.48 | | |||
| Ubxd4 | OLF | Olfactory bulb | 11.55 | |
| 12.13 | | |||
| Ubxd4 | P | Pons | 11.44 | |
| 14.77 | | |||
| Ubxd4 | PAL | Pallidum | 3.67 | |
| 4.08 | | |||
| Ubxd4 | RHP | Retrohippocampal region | 6.37 | |
| 5.73 | | |||
| Ubxd4 | sAMY | Striatum-like amygdalar nuclei | 11.24 | |
| 12.49 | | |||
| Ubxd4 | STR | Striatum | 2.5 | |
| 2.75 | | |||
| Ubxd4 | STRd | Striatum dorsal region | 0.63 | |
| 0.86 | | |||
| Ubxd4 | STRv | Striatum ventral region | 2.3 | |
| 2.37 | | |||
| Ubxd4 | TH | Thalamus | 9.29 | |
| 9.59 | |