Annotation Detail for XIRP1
Basic Information Top
| Gene Symbol: | XIRP1 ( CMYA1,DKFZp451D042,DKFZp779C1255,DKFZp779C1947,Xin ) |
|---|---|
| Gene Full Name: | xin actin-binding repeat containing 1 |
| Band: | 3p22.2 |
| Quick Links | Entrez ID:165904; OMIM: 609777; Uniprot ID:XIRP1_HUMAN; ENSEMBL ID: ENSG00000168334; HGNC ID: 14301 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.447868
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 1 / 70761 | 14 |  |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 12 / 564012 | 21 | |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 28 / 1939121 | 14 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 2 / 17475 | 114 |  |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 11 / 136302 | 80 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 39 / 3360307 | 11 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 2 / 29757 | 67 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 0 / 1100989 | 0 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 |  |
| esophagus | 0 / 20209 | 0 | |
| eye | 1 / 211054 | 4 | |
| heart | 17 / 89626 | 189 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 1 / 211777 | 4 | |
| larynx | 9 / 24145 | 372 |  |
| liver | 1 / 207743 | 4 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 4 / 67052 | 59 | |
| muscle | 8 / 107715 | 74 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 1 / 189345 | 5 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_15017_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.29 ± 1.13 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.53 ± 0.36 | |
| Basal Part of Pons | 1.24 ± 0.55 | |
| Cerebellar Cortex | 1.47 ± 0.93 | |
| Cerebellar Nuclei | 1.86 ± 0.72 | |
| Claustrum | 2.66 ± 1.12 | |
| Epithalamus | 1.25 ± 0.95 | |
| Frontal Lobe | 1.63 ± 0.95 | |
| Globus Pallidus | 2.34 ± 0.62 | |
| Hypothalamus | 1.8 ± 0.86 | |
| Insula | 1.32 ± 0.62 | |
| Limbic Lobe | 1.72 ± 0.89 | |
| Mesencephalon | 1.83 ± 0.94 | |
| Myelencephalon | 1.72 ± 0.86 | |
| Occipital Lobe | 1.72 ± 0.94 | |
| Parietal Lobe | 1.75 ± 0.92 | |
| Pontine Tegmentum | 1.78 ± 0.92 | |
| Striatum | 1.92 ± 0.97 | |
| Subthalamus | 1.49 ± 0.94 | |
| Temporal Lobe | 1.68 ± 0.99 | |
| Thalamus | 1.68 ± 0.79 | |
| White Matter | 1.48 ± 0.47 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Cmya1 | CB | Cerebellum | 2.26 | |
| 2.12 | | |||
| Cmya1 | CTX | Cerebral cortex | 0.74 | |
| 0.61 | | |||
| Cmya1 | HIP | Hippocampal region | 0.39 | |
| 0.42 | | |||
| Cmya1 | HPF | Hippocampal formation | 0.5 | |
| 0.46 | | |||
| Cmya1 | HY | Hypothalamus | 0.46 | |
| 0.21 | | |||
| Cmya1 | LSX | Lateral septal complex | 0.14 | |
| 0.05 | | |||
| Cmya1 | MB | Midbrain | 0.55 | |
| 0.46 | | |||
| Cmya1 | MY | Medulla | 1.39 | |
| 1.8 | | |||
| Cmya1 | OLF | Olfactory bulb | 1.12 | |
| 0.89 | | |||
| Cmya1 | P | Pons | 0.75 | |
| 0.55 | | |||
| Cmya1 | PAL | Pallidum | 0.09 | |
| 0.05 | | |||
| Cmya1 | RHP | Retrohippocampal region | 0.66 | |
| 0.52 | | |||
| Cmya1 | sAMY | Striatum-like amygdalar nuclei | 0.66 | |
| 0.54 | | |||
| Cmya1 | STR | Striatum | 0.34 | |
| 0.18 | | |||
| Cmya1 | STRd | Striatum dorsal region | 0.19 | |
| 0.1 | | |||
| Cmya1 | STRv | Striatum ventral region | 0.72 | |
| 0.25 | | |||
| Cmya1 | TH | Thalamus | 0.22 | |
| 0.18 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00427782 | 19 | 1001 | 1019 | AVPLAGEAAAPAQLQNTEK | Peptide Atlas |