Annotation Detail for SPATA5
Basic Information Top
| Gene Symbol: | SPATA5 ( AFG2,SPAF ) |
|---|---|
| Gene Full Name: | spermatogenesis associated 5 |
| Band: | 4q28.1 |
| Quick Links | Entrez ID:166378; OMIM: NA; Uniprot ID:SPAT5_HUMAN; ENSEMBL ID: ENSG00000145375; HGNC ID: 18119 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.709648
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 14 / 564012 | 24 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 16 / 1939121 | 8 |  |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 6 / 82823 | 72 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 7 / 263845 | 26 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 2 / 68959 | 29 | |
| leukemia | 2 / 95842 | 20 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 38 / 3360307 | 11 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 3 / 124949 | 24 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 6 / 71655 | 83 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 0 / 149255 | 0 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 1 / 215722 | 4 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 3 / 211054 | 14 | |
| heart | 1 / 89626 | 11 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 4 / 211777 | 18 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 1 / 107715 | 9 | |
| nerve | 1 / 15768 | 63 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 0 / 214812 | 0 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 1 / 280825 | 3 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 2 / 330442 | 6 | |
| thymus | 2 / 81131 | 24 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 1 / 52413 | 19 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 2 / 232878 | 8 | |
| vascular | 0 / 51780 | 0 |
Microarray in - Probe name: CUST_1429_PI416261804
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.73 ± 0.97 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.66 ± 0.41 | |
| Basal Part of Pons | 3.45 ± 0.58 | |
| Cerebellar Cortex | 3.95 ± 0.45 | |
| Cerebellar Nuclei | 3.8 ± 0.91 | |
| Claustrum | 3.46 ± 0.55 | |
| Epithalamus | 4 ± 0.46 | |
| Frontal Lobe | 3.43 ± 0.66 | |
| Globus Pallidus | 4.26 ± 0.66 | |
| Hypothalamus | 3.41 ± 0.49 | |
| Insula | 3.32 ± 0.63 | |
| Limbic Lobe | 3.49 ± 0.59 | |
| Mesencephalon | 3.77 ± 0.65 | |
| Myelencephalon | 3.58 ± 0.54 | |
| Occipital Lobe | 3.82 ± 0.56 | |
| Parietal Lobe | 3.55 ± 0.64 | |
| Pontine Tegmentum | 3.72 ± 0.75 | |
| Striatum | 3.56 ± 0.7 | |
| Subthalamus | 3.93 ± 0.51 | |
| Temporal Lobe | 3.54 ± 0.64 | |
| Thalamus | 3.67 ± 0.53 | |
| White Matter | 4.72 ± 0.11 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Spata5 | CB | Cerebellum | 14.84 | |
| 16.62 | | |||
| Spata5 | CTX | Cerebral cortex | 58.01 | |
| 41.87 | | |||
| Spata5 | HIP | Hippocampal region | 36.18 | |
| 41.47 | | |||
| Spata5 | HPF | Hippocampal formation | 37.47 | |
| 37.98 | | |||
| Spata5 | HY | Hypothalamus | 12.26 | |
| 9.34 | | |||
| Spata5 | LSX | Lateral septal complex | 19.78 | |
| 13.59 | | |||
| Spata5 | MB | Midbrain | 17.97 | |
| 15.61 | | |||
| Spata5 | MY | Medulla | 23.88 | |
| 26.5 | | |||
| Spata5 | OLF | Olfactory bulb | 53.24 | |
| 45.57 | | |||
| Spata5 | P | Pons | 20.59 | |
| 21.01 | | |||
| Spata5 | PAL | Pallidum | 16.83 | |
| 13.81 | | |||
| Spata5 | RHP | Retrohippocampal region | 39.5 | |
| 33.6 | | |||
| Spata5 | sAMY | Striatum-like amygdalar nuclei | 13.04 | |
| 9.28 | | |||
| Spata5 | STR | Striatum | 24.52 | |
| 16.86 | | |||
| Spata5 | STRd | Striatum dorsal region | 24.03 | |
| 16.47 | | |||
| Spata5 | STRv | Striatum ventral region | 34.39 | |
| 22.88 | | |||
| Spata5 | TH | Thalamus | 22.03 | |
| 17.84 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00010809 | 22 | 10 | 31 | LNQSAENGSSLPSAASSCAEAR | Peptide Atlas |