Annotation Detail for SGMS2
Basic Information Top
| Gene Symbol: | SGMS2 ( MGC26963,SMS2 ) |
|---|---|
| Gene Full Name: | sphingomyelin synthase 2 |
| Band: | 4q25 |
| Quick Links | Entrez ID:166929; OMIM: 611574; Uniprot ID:SMS2_HUMAN; ENSEMBL ID: ENSG00000164023; HGNC ID: 28395 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.595423
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 10 / 564012 | 17 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 54 / 1939121 | 27 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 |  |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 1 / 94178 | 10 |  |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 1 / 114246 | 8 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 6 / 119369 | 50 | |
| germ cell tumor | 1 / 263845 | 3 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 9 / 136302 | 66 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 1 / 95842 | 10 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 1 / 103127 | 9 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 82 / 3360307 | 24 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 4 / 104616 | 38 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 1 / 125191 | 7 | |
| uterine tumor | 2 / 90257 | 22 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 2 / 13106 | 152 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 2 / 40015 | 49 | |
| bladder | 1 / 29757 | 33 | |
| blood | 0 / 123478 | 0 | |
| bone | 1 / 71655 | 13 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 10 / 1100989 | 9 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 2 / 215722 | 9 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 0 / 89626 | 0 | |
| intestine | 1 / 234472 | 4 | |
| kidney | 2 / 211777 | 9 | |
| larynx | 0 / 24145 | 0 | |
| liver | 2 / 207743 | 9 | |
| lung | 15 / 336974 | 44 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 4 / 153271 | 26 | |
| mouth | 3 / 67052 | 44 | |
| muscle | 7 / 107715 | 64 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 9 / 214812 | 41 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 9 / 280825 | 32 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 6 / 96619 | 62 | |
| testis | 22 / 330442 | 66 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 3 / 52413 | 57 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 7 / 232878 | 30 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_23_P326204
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 3.57 ± 0.85 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 3.47 ± 1.18 | |
| Basal Part of Pons | 2.62 ± 0.5 | |
| Cerebellar Cortex | 3.88 ± 0.4 | |
| Cerebellar Nuclei | 3.42 ± 0.83 | |
| Claustrum | 3.41 ± 0.78 | |
| Epithalamus | 5.2 ± 1.05 | |
| Frontal Lobe | 3.17 ± 0.91 | |
| Globus Pallidus | 3.39 ± 0.86 | |
| Hypothalamus | 3.71 ± 0.51 | |
| Insula | 3.12 ± 0.63 | |
| Limbic Lobe | 3.1 ± 0.85 | |
| Mesencephalon | 3.55 ± 0.84 | |
| Myelencephalon | 3.39 ± 0.82 | |
| Occipital Lobe | 3.77 ± 1.01 | |
| Parietal Lobe | 3.23 ± 0.84 | |
| Pontine Tegmentum | 3.44 ± 0.76 | |
| Striatum | 3.16 ± 1.17 | |
| Subthalamus | 3.22 ± 0.17 | |
| Temporal Lobe | 3.14 ± 0.86 | |
| Thalamus | 3.46 ± 0.77 | |
| White Matter | 2.8 ± 0.82 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| 4933405A16Rik | CB | Cerebellum | 3.8 | |
| 6.38 | | |||
| 4933405A16Rik | CTX | Cerebral cortex | 4.83 | |
| 3.65 | | |||
| 4933405A16Rik | HIP | Hippocampal region | 1.1 | |
| 1.1 | | |||
| 4933405A16Rik | HPF | Hippocampal formation | 1.23 | |
| 1.07 | | |||
| 4933405A16Rik | HY | Hypothalamus | 0.19 | |
| 0.19 | | |||
| 4933405A16Rik | LSX | Lateral septal complex | 0.14 | |
| 0.08 | | |||
| 4933405A16Rik | MB | Midbrain | 0.68 | |
| 0.79 | | |||
| 4933405A16Rik | MY | Medulla | 1.82 | |
| 3.66 | | |||
| 4933405A16Rik | OLF | Olfactory bulb | 3.34 | |
| 3.38 | | |||
| 4933405A16Rik | P | Pons | 0.77 | |
| 1.25 | | |||
| 4933405A16Rik | PAL | Pallidum | 2.63 | |
| 2.5 | | |||
| 4933405A16Rik | RHP | Retrohippocampal region | 1.43 | |
| 1.04 | | |||
| 4933405A16Rik | sAMY | Striatum-like amygdalar nuclei | 6.83 | |
| 6.21 | | |||
| 4933405A16Rik | STR | Striatum | 4.87 | |
| 3.55 | | |||
| 4933405A16Rik | STRd | Striatum dorsal region | 5.9 | |
| 4.16 | | |||
| 4933405A16Rik | STRv | Striatum ventral region | 1.51 | |
| 0.96 | | |||
| 4933405A16Rik | TH | Thalamus | 6.15 | |
| 7.51 | |