Annotation Detail for PAPD4
Basic Information Top
| Gene Symbol: | PAPD4 ( FLJ38499 ) |
|---|---|
| Gene Full Name: | PAP associated domain containing 4 |
| Band: | 5q14.1 |
| Quick Links | Entrez ID:167153; OMIM: NA; Uniprot ID:GLD2_HUMAN; ENSEMBL ID: ENSG00000164329; HGNC ID: 26776 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.418198
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 10 / 70761 | 141 |  |
| blastocyst | 1 / 62319 | 16 |  |
| fetus | 22 / 564012 | 39 | |
| neonate | 2 / 31097 | 64 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 4 / 55556 | 71 | |
| adult | 107 / 1939121 | 55 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 1 / 12794 | 78 | |
| bladder carcinoma | 3 / 17475 | 171 | |
| breast (mammary gland) tumor | 27 / 94178 | 286 |  |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 4 / 82823 | 48 | |
| colorectal tumor | 4 / 114246 | 35 | |
| esophageal tumor | 1 / 17290 | 57 | |
| gastrointestinal tumor | 3 / 119369 | 25 | |
| germ cell tumor | 13 / 263845 | 49 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 13 / 136302 | 95 | |
| kidney tumor | 4 / 68959 | 58 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 5 / 96359 | 51 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 3 / 71755 | 41 | |
| non-neoplasia | 6 / 97250 | 61 | |
| normal | 153 / 3360307 | 45 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 1 / 125680 | 7 |  |
| prostate cancer | 2 / 102680 | 19 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 4 / 125191 | 31 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 4 / 33197 | 120 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 4 / 29757 | 134 | |
| blood | 8 / 123478 | 64 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 58 / 1100989 | 52 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 6 / 149255 | 40 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 14 / 215722 | 64 | |
| esophagus | 1 / 20209 | 49 | |
| eye | 1 / 211054 | 4 | |
| heart | 3 / 89626 | 33 | |
| intestine | 5 / 234472 | 21 | |
| kidney | 11 / 211777 | 51 | |
| larynx | 1 / 24145 | 41 | |
| liver | 8 / 207743 | 38 | |
| lung | 13 / 336974 | 38 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 19 / 91610 | 207 | |
| mammary gland | 32 / 153271 | 208 | |
| mouth | 7 / 67052 | 104 | |
| muscle | 4 / 107715 | 37 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 7 / 214812 | 32 | |
| parathyroid | 1 / 20539 | 48 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 15 / 280825 | 53 | |
| prostate | 3 / 189345 | 15 | |
| salivary gland | 1 / 20155 | 49 | |
| skin | 3 / 210574 | 14 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 3 / 96619 | 31 | |
| testis | 17 / 330442 | 51 | |
| thymus | 15 / 81131 | 184 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 12 / 52413 | 228 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 10 / 232878 | 42 | |
| vascular | 2 / 51780 | 38 | |
Microarray in - Probe name: A_23_P314202
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 7.59 ± 0.31 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 7.48 ± 0.13 | |
| Basal Part of Pons | 7.13 ± 0.28 | |
| Cerebellar Cortex | 7.14 ± 0.23 | |
| Cerebellar Nuclei | 7.37 ± 0.2 | |
| Claustrum | 7.55 ± 0.2 | |
| Epithalamus | 7.5 ± 0.26 | |
| Frontal Lobe | 7.22 ± 0.28 | |
| Globus Pallidus | 7.97 ± 0.11 | |
| Hypothalamus | 7.25 ± 0.31 | |
| Insula | 7.23 ± 0.19 | |
| Limbic Lobe | 7.4 ± 0.31 | |
| Mesencephalon | 7.39 ± 0.33 | |
| Myelencephalon | 7.38 ± 0.32 | |
| Occipital Lobe | 7.69 ± 0.32 | |
| Parietal Lobe | 7.39 ± 0.31 | |
| Pontine Tegmentum | 7.41 ± 0.38 | |
| Striatum | 7.89 ± 0.35 | |
| Subthalamus | 7.3 ± 0.17 | |
| Temporal Lobe | 7.23 ± 0.28 | |
| Thalamus | 7.25 ± 0.26 | |
| White Matter | 8.24 ± 0.23 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Papd4 | CB | Cerebellum | 18.14 | |
| 20.9 | | |||
| Papd4 | CTX | Cerebral cortex | 36.09 | |
| 25.37 | | |||
| Papd4 | HIP | Hippocampal region | 23.82 | |
| 29.85 | | |||
| Papd4 | HPF | Hippocampal formation | 25.01 | |
| 25.38 | | |||
| Papd4 | HY | Hypothalamus | 3.36 | |
| 3 | | |||
| Papd4 | LSX | Lateral septal complex | 4.43 | |
| 2.72 | | |||
| Papd4 | MB | Midbrain | 3.63 | |
| 3.22 | | |||
| Papd4 | MY | Medulla | 9.09 | |
| 9.48 | | |||
| Papd4 | OLF | Olfactory bulb | 31.03 | |
| 23.6 | | |||
| Papd4 | P | Pons | 6.54 | |
| 6.06 | | |||
| Papd4 | PAL | Pallidum | 3.47 | |
| 2.64 | | |||
| Papd4 | RHP | Retrohippocampal region | 27.73 | |
| 19.97 | | |||
| Papd4 | sAMY | Striatum-like amygdalar nuclei | 6.35 | |
| 4.63 | | |||
| Papd4 | STR | Striatum | 22.62 | |
| 15.27 | | |||
| Papd4 | STRd | Striatum dorsal region | 27 | |
| 18.17 | | |||
| Papd4 | STRv | Striatum ventral region | 23.97 | |
| 16.33 | | |||
| Papd4 | TH | Thalamus | 6.74 | |
| 5.64 | |