Annotation Detail for ARX
Basic Information Top
| Gene Symbol: | ARX ( CT121,ISSX,MRX29,MRX32,MRX33,MRX36,MRX38,MRX43,MRX54,MRX76,MRX87,MRXS1,PRTS ) |
|---|---|
| Gene Full Name: | aristaless related homeobox |
| Band: | Xp21.3 |
| Quick Links | Entrez ID:170302; OMIM: 300382; Uniprot ID:ARX_HUMAN; ENSEMBL ID: ENSG00000004848; HGNC ID: 18060 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.300304
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 5 / 564012 | 8 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 5 / 1939121 | 2 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 |  |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 15 / 263845 | 56 |  |
| glioma | 1 / 106883 | 9 | |
| head and neck tumor | 0 / 136302 | 0 | |
| kidney tumor | 0 / 68959 | 0 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 0 / 97250 | 0 | |
| normal | 21 / 3360307 | 6 | |
| ovarian tumor | 6 / 76682 | 78 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 2 / 125680 | 15 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 0 / 125191 | 0 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 7 / 1100989 | 6 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 1 / 149255 | 6 | |
| ear | 0 / 16212 | 0 | |
| embryonic tissue | 0 / 215722 | 0 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 0 / 211054 | 0 | |
| heart | 0 / 89626 | 0 | |
| intestine | 0 / 234472 | 0 | |
| kidney | 0 / 211777 | 0 | |
| larynx | 0 / 24145 | 0 | |
| liver | 0 / 207743 | 0 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 0 / 91610 | 0 | |
| mammary gland | 0 / 153271 | 0 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 0 / 107715 | 0 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 6 / 102051 | 58 | |
| pancreas | 12 / 214812 | 55 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 0 / 280825 | 0 | |
| prostate | 0 / 189345 | 0 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 1 / 210574 | 4 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 0 / 96619 | 0 | |
| testis | 0 / 330442 | 0 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 0 / 232878 | 0 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_32_P109666
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.49 ± 1.44 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.89 ± 0.42 | |
| Basal Part of Pons | 1.82 ± 1.02 | |
| Cerebellar Cortex | 1.64 ± 0.92 | |
| Cerebellar Nuclei | 1.99 ± 1.02 | |
| Claustrum | 2.96 ± 0.96 | |
| Epithalamus | 1.56 ± 0.97 | |
| Frontal Lobe | 1.73 ± 0.98 | |
| Globus Pallidus | 3.01 ± 1.13 | |
| Hypothalamus | 1.8 ± 1.03 | |
| Insula | 1.62 ± 0.61 | |
| Limbic Lobe | 2.11 ± 0.98 | |
| Mesencephalon | 2.15 ± 1.1 | |
| Myelencephalon | 2 ± 0.88 | |
| Occipital Lobe | 2.19 ± 1.07 | |
| Parietal Lobe | 2.03 ± 0.99 | |
| Pontine Tegmentum | 1.93 ± 0.92 | |
| Striatum | 2.35 ± 0.99 | |
| Subthalamus | 2.22 ± 1.08 | |
| Temporal Lobe | 1.83 ± 0.97 | |
| Thalamus | 1.84 ± 0.79 | |
| White Matter | 2.28 ± 0.16 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Arx | CB | Cerebellum | 2.63 | |
| 2.66 | | |||
| Arx | CTX | Cerebral cortex | 7.85 | |
| 4.37 | | |||
| Arx | HIP | Hippocampal region | 14.28 | |
| 9.85 | | |||
| Arx | HPF | Hippocampal formation | 13.19 | |
| 8.28 | | |||
| Arx | HY | Hypothalamus | 3.96 | |
| 2.17 | | |||
| Arx | LSX | Lateral septal complex | 3.38 | |
| 2.01 | | |||
| Arx | MB | Midbrain | 9.6 | |
| 6.91 | | |||
| Arx | MY | Medulla | 6.74 | |
| 4.97 | | |||
| Arx | OLF | Olfactory bulb | 8.98 | |
| 5.58 | | |||
| Arx | P | Pons | 9.15 | |
| 5.86 | | |||
| Arx | PAL | Pallidum | 4.13 | |
| 2.81 | | |||
| Arx | RHP | Retrohippocampal region | 11.69 | |
| 6.34 | | |||
| Arx | sAMY | Striatum-like amygdalar nuclei | 5.61 | |
| 2.97 | | |||
| Arx | STR | Striatum | 4.67 | |
| 2.49 | | |||
| Arx | STRd | Striatum dorsal region | 4.56 | |
| 2.48 | | |||
| Arx | STRv | Striatum ventral region | 4.43 | |
| 2.13 | | |||
| Arx | TH | Thalamus | 7.29 | |
| 4.18 | |