AutismKB 2.0

Annotation Detail for SSBP4


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Basic Information Top
Gene Symbol:SSBP4 ( MGC3181 )
Gene Full Name: single stranded DNA binding protein 4
Band: 19p13.1
Quick LinksEntrez ID:170463; OMIM: 607391; Uniprot ID:SSBP4_HUMAN; ENSEMBL ID: ENSG00000130511; HGNC ID: 15676
Relate to Another Database: SFARIGene; denovo-db
Unigene EST Top
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
embryoid body3 / 7076142
blastocyst1 / 6231916
fetus25 / 56401244
neonate0 / 310970 
infant1 / 2362042
juvenile0 / 555560 
adult135 / 193912169
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adrenal tumor0 / 127940 
bladder carcinoma0 / 174750 
breast (mammary gland) tumor11 / 94178116
cervical tumor0 / 343660 
chondrosarcoma3 / 8282336
colorectal tumor4 / 11424635
esophageal tumor1 / 1729057
gastrointestinal tumor34 / 119369284
germ cell tumor16 / 26384560
glioma17 / 106883159
head and neck tumor7 / 13630251
kidney tumor2 / 6895929
leukemia11 / 95842114
liver tumor0 / 963590 
lung tumor2 / 10312719
lymphoma0 / 717550 
non-neoplasia0 / 972500 
normal184 / 336030754
ovarian tumor12 / 76682156
pancreatic tumor1 / 1046169
primitive neuroectodermal tumor of the CNS17 / 125680135
prostate cancer3 / 10268029
retinoblastoma6 / 46356129
skin tumor9 / 12494972
soft tissue/muscle tissue tumor2 / 12519115
uterine tumor7 / 9025777
Pool Name Gene EST/Total EST in pool Transcripts per million(TPM) Bar based on TPM
adipose tissue0 / 131060 
adrenal gland1 / 3319730
ascites14 / 40015349
bladder0 / 297570 
blood10 / 12347880
bone6 / 7165583
bone marrow0 / 488010 
brain56 / 110098950
cervix2 / 4817141
connective tissue2 / 14925513
ear0 / 162120 
embryonic tissue10 / 21572246
esophagus1 / 2020949
eye19 / 21105490
heart2 / 8962622
intestine16 / 23447268
kidney8 / 21177737
larynx0 / 241450 
liver1 / 2077434
lung21 / 33697462
lymph0 / 442700 
lymph node17 / 91610185
mammary gland12 / 15327178
mouth0 / 670520 
muscle0 / 1077150 
nerve2 / 15768126
ovary21 / 102051205
pancreas44 / 214812204
parathyroid3 / 20539146
pharynx0 / 413280 
pituitary gland0 / 165850 
placenta8 / 28082528
prostate9 / 18934547
salivary gland5 / 20155248
skin9 / 21057442
spleen0 / 539520 
stomach5 / 9661951
testis2 / 3304426
thymus0 / 811310 
thyroid2 / 4747342
tonsil0 / 169990 
trachea0 / 524130 
umbilical cord0 / 136800 
uterus14 / 23287860
vascular0 / 517800 
Microarray in BioGPS Top
Allen Brain Atlas Top
Human Whole Brain Microarrayview in Allen Brain Atlas
  • Probe id     Donor id      
  • Probe name: A_24_P159916
  • Donor H0351.2001
  • Sex: Male     Age: 24 years     Race/Ethnicity: African American     Handedness: Left
  • Tissue Receipt Date: 7/29/2009     Serology: Pass      Tissue pH :6.72     Additional Medical Information :History of asthma
  • Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
  • Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
Tissue Expression(mean ± stddev) Expression Bar
Amygdala8.2 ± 0.46
Basal Forebrain8.13 ± 0.35
Basal Part of Pons7.79 ± 0.29
Cerebellar Cortex7.63 ± 0.18
Cerebellar Nuclei7.87 ± 0.35
Claustrum8.44 ± 0.54
Epithalamus7.94 ± 0.48
Frontal Lobe8.02 ± 0.46
Globus Pallidus7.98 ± 0.29
Hypothalamus7.9 ± 0.3
Insula8.05 ± 0.35
Limbic Lobe8.15 ± 0.46
Mesencephalon8.02 ± 0.38
Myelencephalon8.05 ± 0.42
Occipital Lobe7.86 ± 0.32
Parietal Lobe7.93 ± 0.38
Pontine Tegmentum7.92 ± 0.42
Striatum8.34 ± 0.4
Subthalamus7.46 ± 0.32
Temporal Lobe8.12 ± 0.38
Thalamus7.79 ± 0.4
White Matter7.56 ± 0.43
Mouse Brain ISH
Gene Symbol Brain Structure ID Brain Structure Name Express Desity/Level (Meatured by ISH) Express Bar
Ssbp4CBCerebellum58.51
60.95
Ssbp4CTXCerebral cortex100
98.4
Ssbp4HIPHippocampal region100
100
Ssbp4HPFHippocampal formation100
100
Ssbp4HYHypothalamus100
100
Ssbp4LSXLateral septal complex100
100
Ssbp4MBMidbrain77.11
78.29
Ssbp4MYMedulla60.59
70.57
Ssbp4OLFOlfactory bulb100
100
Ssbp4PPons62.22
71.27
Ssbp4PALPallidum98.65
100
Ssbp4RHPRetrohippocampal region92.04
93.49
Ssbp4sAMYStriatum-like amygdalar nuclei100
100
Ssbp4STRStriatum100
100
Ssbp4STRdStriatum dorsal region100
100
Ssbp4STRvStriatum ventral region100
100
Ssbp4THThalamus68.45
65.06
Peptide Top

Simple Query:


  (e.g. CHD8)

Syndromic Genes

Non-syndromic Genes

AutismKB Statistics

  • Studies: 1,036
  • Genes: 1,379
  • CNVs/SVs: 5,420
  • SNVs/Indels: 11,669
  • de novo Mutations: 5,669
  • Mosaics: 789
  • Linkage Regions: 172
  • Paper Collected: 6/30/2018
  • Last Update: 8/26/2018


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