Annotation Detail for COMMD6
Basic Information Top
| Gene Symbol: | COMMD6 ( Acrg ) |
|---|---|
| Gene Full Name: | COMM domain containing 6 |
| Band: | 13q22.2 |
| Quick Links | Entrez ID:170622; OMIM: 612377; Uniprot ID:COMD6_HUMAN; ENSEMBL ID: ENSG00000188243; HGNC ID: 24015 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.508266
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 3 / 70761 | 42 |  |
| blastocyst | 1 / 62319 | 16 | |
| fetus | 36 / 564012 | 63 |  |
| neonate | 1 / 31097 | 32 | |
| infant | 2 / 23620 | 84 | |
| juvenile | 0 / 55556 | 0 | |
| adult | 83 / 1939121 | 42 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 3 / 94178 | 31 | |
| cervical tumor | 1 / 34366 | 29 | |
| chondrosarcoma | 0 / 82823 | 0 | |
| colorectal tumor | 2 / 114246 | 17 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 2 / 119369 | 16 | |
| germ cell tumor | 0 / 263845 | 0 | |
| glioma | 9 / 106883 | 84 | |
| head and neck tumor | 1 / 136302 | 7 |  |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 3 / 95842 | 31 | |
| liver tumor | 6 / 96359 | 62 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 2 / 71755 | 27 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 177 / 3360307 | 52 | |
| ovarian tumor | 1 / 76682 | 13 | |
| pancreatic tumor | 3 / 104616 | 28 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 1 / 102680 | 9 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 1 / 124949 | 8 | |
| soft tissue/muscle tissue tumor | 18 / 125191 | 143 | |
| uterine tumor | 3 / 90257 | 33 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 2 / 33197 | 60 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 1 / 123478 | 8 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 8 / 48801 | 163 | |
| brain | 36 / 1100989 | 32 | |
| cervix | 1 / 48171 | 20 | |
| connective tissue | 17 / 149255 | 113 | |
| ear | 3 / 16212 | 185 | |
| embryonic tissue | 8 / 215722 | 37 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 17 / 211054 | 80 | |
| heart | 17 / 89626 | 189 | |
| intestine | 14 / 234472 | 59 | |
| kidney | 7 / 211777 | 33 | |
| larynx | 1 / 24145 | 41 | |
| liver | 14 / 207743 | 67 | |
| lung | 12 / 336974 | 35 | |
| lymph | 1 / 44270 | 22 | |
| lymph node | 1 / 91610 | 10 | |
| mammary gland | 5 / 153271 | 32 | |
| mouth | 1 / 67052 | 14 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 1 / 102051 | 9 | |
| pancreas | 8 / 214812 | 37 | |
| parathyroid | 2 / 20539 | 97 | |
| pharynx | 0 / 41328 | 0 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 8 / 280825 | 28 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 2 / 210574 | 9 | |
| spleen | 0 / 53952 | 0 | |
| stomach | 3 / 96619 | 31 | |
| testis | 18 / 330442 | 54 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 0 / 47473 | 0 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 0 / 52413 | 0 | |
| umbilical cord | 1 / 13680 | 73 | |
| uterus | 9 / 232878 | 38 | |
| vascular | 6 / 51780 | 115 | |
- Probe name: A_32_P210717
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 2.11 ± 1.05 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.72 ± 0.19 | |
| Basal Part of Pons | 1.34 ± 0.35 | |
| Cerebellar Cortex | 1.63 ± 0.64 | |
| Cerebellar Nuclei | 2.09 ± 0.65 | |
| Claustrum | 2.44 ± 0.71 | |
| Epithalamus | 1.42 ± 0.76 | |
| Frontal Lobe | 1.63 ± 0.63 | |
| Globus Pallidus | 2.56 ± 0.68 | |
| Hypothalamus | 1.88 ± 0.74 | |
| Insula | 1.98 ± 0.74 | |
| Limbic Lobe | 1.71 ± 0.61 | |
| Mesencephalon | 1.87 ± 0.66 | |
| Myelencephalon | 1.76 ± 0.64 | |
| Occipital Lobe | 1.78 ± 0.85 | |
| Parietal Lobe | 1.74 ± 0.57 | |
| Pontine Tegmentum | 1.83 ± 0.67 | |
| Striatum | 1.82 ± 0.66 | |
| Subthalamus | 1.85 ± 0.69 | |
| Temporal Lobe | 1.63 ± 0.63 | |
| Thalamus | 1.69 ± 0.66 | |
| White Matter | 2.25 ± 0.41 | |
Mouse Brain ISH 
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| COMD6_HUMAN_74 | 12 | 74 | 85 | QFKEIAAVIETV | PRIDE |
| PAp00432387 | 14 | 60 | 73 | CFEMTIPQFQNFYR | Peptide Atlas |