Annotation Detail for DMD
Basic Information Top
| Gene Symbol: | DMD ( BMD,CMD3B,DXS142,DXS164,DXS206,DXS230,DXS239,DXS268,DXS269,DXS270,DXS272 ) |
|---|---|
| Gene Full Name: | dystrophin |
| Band: | Xp21.2-p21.1 |
| Quick Links | Entrez ID:1756; OMIM: 300377; Uniprot ID:DMD_HUMAN; ENSEMBL ID: ENSG00000198947; HGNC ID: 2928 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.495912
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 2 / 70761 | 28 |  |
| blastocyst | 2 / 62319 | 32 | |
| fetus | 40 / 564012 | 70 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 0 / 23620 | 0 | |
| juvenile | 2 / 55556 | 35 | |
| adult | 90 / 1939121 | 46 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 0 / 94178 | 0 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 3 / 82823 | 36 | |
| colorectal tumor | 7 / 114246 | 61 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 1 / 119369 | 8 |  |
| germ cell tumor | 2 / 263845 | 7 | |
| glioma | 3 / 106883 | 28 | |
| head and neck tumor | 8 / 136302 | 58 | |
| kidney tumor | 3 / 68959 | 43 | |
| leukemia | 0 / 95842 | 0 | |
| liver tumor | 3 / 96359 | 31 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 0 / 71755 | 0 | |
| non-neoplasia | 1 / 97250 | 10 | |
| normal | 166 / 3360307 | 49 | |
| ovarian tumor | 5 / 76682 | 65 | |
| pancreatic tumor | 2 / 104616 | 19 | |
| primitive neuroectodermal tumor of the CNS | 0 / 125680 | 0 | |
| prostate cancer | 4 / 102680 | 38 | |
| retinoblastoma | 0 / 46356 | 0 | |
| skin tumor | 2 / 124949 | 16 | |
| soft tissue/muscle tissue tumor | 2 / 125191 | 15 | |
| uterine tumor | 1 / 90257 | 11 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 0 / 13106 | 0 | |
| adrenal gland | 1 / 33197 | 30 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 2 / 71655 | 27 | |
| bone marrow | 0 / 48801 | 0 | |
| brain | 62 / 1100989 | 56 | |
| cervix | 6 / 48171 | 124 | |
| connective tissue | 3 / 149255 | 20 | |
| ear | 1 / 16212 | 61 | |
| embryonic tissue | 5 / 215722 | 23 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 13 / 211054 | 61 | |
| heart | 7 / 89626 | 78 | |
| intestine | 12 / 234472 | 51 | |
| kidney | 5 / 211777 | 23 | |
| larynx | 0 / 24145 | 0 | |
| liver | 8 / 207743 | 38 | |
| lung | 4 / 336974 | 11 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 2 / 91610 | 21 | |
| mammary gland | 1 / 153271 | 6 | |
| mouth | 2 / 67052 | 29 | |
| muscle | 17 / 107715 | 157 | |
| nerve | 2 / 15768 | 126 | |
| ovary | 3 / 102051 | 29 | |
| pancreas | 5 / 214812 | 23 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 2 / 41328 | 48 | |
| pituitary gland | 1 / 16585 | 60 | |
| placenta | 7 / 280825 | 24 | |
| prostate | 11 / 189345 | 58 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 4 / 210574 | 18 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 2 / 96619 | 20 | |
| testis | 11 / 330442 | 33 | |
| thymus | 1 / 81131 | 12 | |
| thyroid | 6 / 47473 | 126 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 9 / 52413 | 171 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 8 / 232878 | 34 | |
| vascular | 4 / 51780 | 77 | |
- Microarray Platform: GeneAtlas U133A, gcrma
- Affymatrix Probe ID: 208086_s_at
| Cell line | Expression level | Expression bar |
|---|---|---|
| ||
| 721_B_lymphoblasts | 7.35 | |
| Adipocyte | 6.2 | |
| AdrenalCortex | 8.65 | |
| Adrenalgland | 5.75 | |
| Amygdala | 6.4 | |
| Appendix | 7.7 | |
| AtrioventricularNode | 5.9 | |
| BDCA4+_DentriticCells | 6.25 | |
| Bonemarrow | 6.75 | |
| BronchialEpithelialCells | 6.1 | |
| CD105+_Endothelial | 6.3 | |
| CD14+_Monocytes | 6.65 | |
| CD19+_BCells(neg._sel.) | 6.4 | |
| CD33+_Myeloid | 7.9 | |
| CD34+ | 7.55 | |
| CD4+_Tcells | 6.3 | |
| CD56+_NKCells | 6.9 | |
| CD71+_EarlyErythroid | 6.1 | |
| CD8+_Tcells | 5.9 | |
| CardiacMyocytes | 9.5 | |
| Caudatenucleus | 5.75 | |
| Cerebellum | 5.3 | |
| CerebellumPeduncles | 7.5 | |
| CiliaryGanglion | 5.2 | |
| CingulateCortex | 6.7 | |
| Colorectaladenocarcinoma | 6.25 | |
| DorsalRootGanglion | 5.45 | |
| FetalThyroid | 6.2 | |
| Fetalbrain | 6 | |
| Fetalliver | 5.7 | |
| Fetallung | 4.95 | |
| GlobusPallidus | 4.95 | |
| Heart | 9.3 | |
| Hypothalamus | 6.65 | |
| Kidney | 5.6 | |
| Leukemia_chronicMyelogenousK-562 | 5.7 | |
| Leukemia_promyelocytic-HL-60 | 5.55 | |
| Leukemialymphoblastic(MOLT-4) | 4.9 | |
| Liver | 9.3 | |
| Lung | 6.8 | |
| Lymphnode | 5.1 | |
| Lymphoma_burkitts(Daudi) | 8.1 | |
| Lymphoma_burkitts(Raji) | 9.5 | |
| MedullaOblongata | 5.9 | |
| OccipitalLobe | 6.1 | |
| OlfactoryBulb | 8.05 | |
| Ovary | 4.85 | |
| Pancreas | 5.25 | |
| PancreaticIslet | 6.9 | |
| ParietalLobe | 7.6 | |
| Pituitary | 7.35 | |
| Placenta | 6.3 | |
| Pons | 8.55 | |
| PrefrontalCortex | 7.7 | |
| Prostate | 7.05 | |
| Salivarygland | 10.7 | |
| SkeletalMuscle | 9 | |
| Skin | 5.55 | |
| SmoothMuscle | 7 | |
| Spinalcord | 9.45 | |
| SubthalamicNucleus | 8.5 | |
| SuperiorCervicalGanglion | 14.3 | |
| TemporalLobe | 6.6 | |
| Testis | 5.5 | |
| TestisGermCell | 5.3 | |
| TestisIntersitial | 5.9 | |
| TestisLeydigCell | 6.5 | |
| TestisSeminiferousTubule | 6.55 | |
| Thalamus | 6.6 | |
| Thymus | 4.7 | |
| Thyroid | 7.55 | |
| Tongue | 7.75 | |
| Tonsil | 6.45 | |
| Trachea | 5.25 | |
| TrigeminalGanglion | 8.55 | |
| Uterus | 5.35 | |
| UterusCorpus | 6.7 | |
| WholeBlood | 6.9 | |
| Wholebrain | 5.05 | |
| colon | 6.4 | |
| pineal_day | 7.8 | |
| pineal_night | 7.7 | |
| retina | 7.8 | |
| small_intestine | 6.2 | |
- Probe name: A_23_P321860
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 1.91 ± 1.01 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 1.5 ± 0.21 | |
| Basal Part of Pons | 1.15 ± 0.37 | |
| Cerebellar Cortex | 1.28 ± 0.63 | |
| Cerebellar Nuclei | 1.72 ± 0.7 | |
| Claustrum | 2.29 ± 0.81 | |
| Epithalamus | 1.19 ± 0.69 | |
| Frontal Lobe | 1.37 ± 0.65 | |
| Globus Pallidus | 2.22 ± 0.56 | |
| Hypothalamus | 1.6 ± 0.7 | |
| Insula | 1.42 ± 0.58 | |
| Limbic Lobe | 1.47 ± 0.61 | |
| Mesencephalon | 1.58 ± 0.69 | |
| Myelencephalon | 1.53 ± 0.64 | |
| Occipital Lobe | 1.5 ± 0.61 | |
| Parietal Lobe | 1.47 ± 0.67 | |
| Pontine Tegmentum | 1.59 ± 0.66 | |
| Striatum | 1.65 ± 0.54 | |
| Subthalamus | 1.6 ± 0.63 | |
| Temporal Lobe | 1.38 ± 0.63 | |
| Thalamus | 1.46 ± 0.55 | |
| White Matter | 1.93 ± 0.21 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Dmd | CB | Cerebellum | 12.65 | |
| 18.23 | | |||
| Dmd | CTX | Cerebral cortex | 2.19 | |
| 1.72 | | |||
| Dmd | HIP | Hippocampal region | 2.25 | |
| 2.49 | | |||
| Dmd | HPF | Hippocampal formation | 2.68 | |
| 2.74 | | |||
| Dmd | HY | Hypothalamus | 0.1 | |
| 0.11 | | |||
| Dmd | LSX | Lateral septal complex | 0.22 | |
| 0.27 | | |||
| Dmd | MB | Midbrain | 1.09 | |
| 1.31 | | |||
| Dmd | MY | Medulla | 1.6 | |
| 1.91 | | |||
| Dmd | OLF | Olfactory bulb | 2.73 | |
| 3.04 | | |||
| Dmd | P | Pons | 1.08 | |
| 1.75 | | |||
| Dmd | PAL | Pallidum | 0.1 | |
| 0.09 | | |||
| Dmd | RHP | Retrohippocampal region | 3.58 | |
| 3.23 | | |||
| Dmd | sAMY | Striatum-like amygdalar nuclei | 0.61 | |
| 0.7 | | |||
| Dmd | STR | Striatum | 0.31 | |
| 0.32 | | |||
| Dmd | STRd | Striatum dorsal region | 0.33 | |
| 0.32 | | |||
| Dmd | STRv | Striatum ventral region | 0.13 | |
| 0.17 | | |||
| Dmd | TH | Thalamus | 0.45 | |
| 0.51 | |
| Peptide Name | Peptide Lengh | Peptide Start | Peptide End | Peptide Sequence | Source |
|---|---|---|---|---|---|
| PAp00095361 | 22 | 658 | 679 | ALCLDLLSLSAACDALDQHNLK | Peptide Atlas |