Annotation Detail for EBF1
Basic Information Top
| Gene Symbol: | EBF1 ( COE1,EBF,FLJ39389,FLJ41763,O/E-1,OLF1 ) |
|---|---|
| Gene Full Name: | early B-cell factor 1 |
| Band: | 5q33.3 |
| Quick Links | Entrez ID:1879; OMIM: 164343; Uniprot ID:COE1_HUMAN; ENSEMBL ID: ENSG00000164330; HGNC ID: 3126 |
| Relate to Another Database: | SFARIGene; denovo-db |
- Unigene ID: Hs.573143
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
 | |||
| embryoid body | 0 / 70761 | 0 | |
| blastocyst | 0 / 62319 | 0 | |
| fetus | 20 / 564012 | 35 |  |
| neonate | 0 / 31097 | 0 | |
| infant | 2 / 23620 | 84 |  |
| juvenile | 0 / 55556 | 0 | |
| adult | 32 / 1939121 | 16 | |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adrenal tumor | 0 / 12794 | 0 | |
| bladder carcinoma | 0 / 17475 | 0 | |
| breast (mammary gland) tumor | 2 / 94178 | 21 | |
| cervical tumor | 0 / 34366 | 0 | |
| chondrosarcoma | 1 / 82823 | 12 | |
| colorectal tumor | 0 / 114246 | 0 | |
| esophageal tumor | 0 / 17290 | 0 | |
| gastrointestinal tumor | 0 / 119369 | 0 | |
| germ cell tumor | 18 / 263845 | 68 | |
| glioma | 0 / 106883 | 0 | |
| head and neck tumor | 3 / 136302 | 22 | |
| kidney tumor | 1 / 68959 | 14 | |
| leukemia | 5 / 95842 | 52 | |
| liver tumor | 0 / 96359 | 0 | |
| lung tumor | 0 / 103127 | 0 | |
| lymphoma | 1 / 71755 | 13 | |
| non-neoplasia | 4 / 97250 | 41 | |
| normal | 87 / 3360307 | 25 | |
| ovarian tumor | 0 / 76682 | 0 | |
| pancreatic tumor | 0 / 104616 | 0 | |
| primitive neuroectodermal tumor of the CNS | 4 / 125680 | 31 | |
| prostate cancer | 0 / 102680 | 0 | |
| retinoblastoma | 1 / 46356 | 21 | |
| skin tumor | 0 / 124949 | 0 | |
| soft tissue/muscle tissue tumor | 3 / 125191 | 23 | |
| uterine tumor | 0 / 90257 | 0 |
| Pool Name | Gene EST/Total EST in pool | Transcripts per million(TPM) | Bar based on TPM |
|---|---|---|---|
| |||
| adipose tissue | 1 / 13106 | 76 | |
| adrenal gland | 0 / 33197 | 0 | |
| ascites | 0 / 40015 | 0 | |
| bladder | 0 / 29757 | 0 | |
| blood | 0 / 123478 | 0 | |
| bone | 0 / 71655 | 0 | |
| bone marrow | 1 / 48801 | 20 | |
| brain | 15 / 1100989 | 13 | |
| cervix | 0 / 48171 | 0 | |
| connective tissue | 5 / 149255 | 33 | |
| ear | 2 / 16212 | 123 | |
| embryonic tissue | 7 / 215722 | 32 | |
| esophagus | 0 / 20209 | 0 | |
| eye | 5 / 211054 | 23 | |
| heart | 2 / 89626 | 22 | |
| intestine | 1 / 234472 | 4 |  |
| kidney | 4 / 211777 | 18 | |
| larynx | 3 / 24145 | 124 | |
| liver | 1 / 207743 | 4 | |
| lung | 1 / 336974 | 2 | |
| lymph | 0 / 44270 | 0 | |
| lymph node | 21 / 91610 | 229 |  |
| mammary gland | 6 / 153271 | 39 | |
| mouth | 0 / 67052 | 0 | |
| muscle | 2 / 107715 | 18 | |
| nerve | 0 / 15768 | 0 | |
| ovary | 0 / 102051 | 0 | |
| pancreas | 1 / 214812 | 4 | |
| parathyroid | 0 / 20539 | 0 | |
| pharynx | 1 / 41328 | 24 | |
| pituitary gland | 0 / 16585 | 0 | |
| placenta | 13 / 280825 | 46 | |
| prostate | 4 / 189345 | 21 | |
| salivary gland | 0 / 20155 | 0 | |
| skin | 0 / 210574 | 0 | |
| spleen | 1 / 53952 | 18 | |
| stomach | 0 / 96619 | 0 | |
| testis | 6 / 330442 | 18 | |
| thymus | 0 / 81131 | 0 | |
| thyroid | 1 / 47473 | 21 | |
| tonsil | 0 / 16999 | 0 | |
| trachea | 2 / 52413 | 38 | |
| umbilical cord | 0 / 13680 | 0 | |
| uterus | 1 / 232878 | 4 | |
| vascular | 1 / 51780 | 19 | |
Microarray in - Probe name: A_32_P197561
- Donor H0351.2001
- Sex: Male Age: 24 years Race/Ethnicity: African American Handedness: Left
- Tissue Receipt Date: 7/29/2009 Serology: Pass Tissue pH :6.72 Additional Medical Information :History of asthma
- Postmortem Interval: 23 hours (estimated time of death to time that tissue is frozen)
- Toxicology: Positive for atropine and caffeine, at levels usually not toxicologically significant
| Tissue | Expression(mean ± stddev) | Expression Bar |
|---|---|---|
| Amygdala | 5.54 ± 0.34 | ![](../"images/bar_3.png"){kind=small}   |
| Basal Forebrain | 6.28 ± 0.34 | |
| Basal Part of Pons | 5.24 ± 0.35 | |
| Cerebellar Cortex | 7.19 ± 0.5 | |
| Cerebellar Nuclei | 7.54 ± 0.37 | |
| Claustrum | 5.48 ± 0.49 | |
| Epithalamus | 6.56 ± 0.9 | |
| Frontal Lobe | 6.27 ± 0.65 | |
| Globus Pallidus | 6.93 ± 1.12 | |
| Hypothalamus | 6.41 ± 0.41 | |
| Insula | 6.26 ± 0.33 | |
| Limbic Lobe | 6 ± 0.63 | |
| Mesencephalon | 6.99 ± 0.69 | |
| Myelencephalon | 6.54 ± 0.78 | |
| Occipital Lobe | 6.5 ± 0.77 | |
| Parietal Lobe | 6.06 ± 0.63 | |
| Pontine Tegmentum | 6.69 ± 0.6 | |
| Striatum | 7.55 ± 1.32 | |
| Subthalamus | 6.58 ± 0.1 | |
| Temporal Lobe | 6.04 ± 0.44 | |
| Thalamus | 6.48 ± 0.54 | |
| White Matter | 6.41 ± 0.85 | |
Mouse Brain ISH 
| Gene Symbol | Brain Structure ID | Brain Structure Name | Express Desity/Level (Meatured by ISH) | Express Bar |
|---|---|---|---|---|
| Ebf1 | CB | Cerebellum | 25 | |
| 30.81 | | |||
| Ebf1 | CTX | Cerebral cortex | 10.48 | |
| 7.22 | | |||
| Ebf1 | HIP | Hippocampal region | 17.3 | |
| 9.72 | | |||
| Ebf1 | HPF | Hippocampal formation | 13.09 | |
| 7.07 | | |||
| Ebf1 | HY | Hypothalamus | 7.25 | |
| 5.33 | | |||
| Ebf1 | LSX | Lateral septal complex | 11.78 | |
| 6.37 | | |||
| Ebf1 | MB | Midbrain | 10.02 | |
| 8.65 | | |||
| Ebf1 | MY | Medulla | 11.65 | |
| 11.24 | | |||
| Ebf1 | OLF | Olfactory bulb | 13.64 | |
| 7.67 | | |||
| Ebf1 | P | Pons | 13.06 | |
| 12.71 | | |||
| Ebf1 | PAL | Pallidum | 5.94 | |
| 4.59 | | |||
| Ebf1 | RHP | Retrohippocampal region | 3.75 | |
| 2.45 | | |||
| Ebf1 | sAMY | Striatum-like amygdalar nuclei | 5.23 | |
| 3.23 | | |||
| Ebf1 | STR | Striatum | 5.22 | |
| 3.12 | | |||
| Ebf1 | STRd | Striatum dorsal region | 2.71 | |
| 1.65 | | |||
| Ebf1 | STRv | Striatum ventral region | 14.55 | |
| 7.93 | | |||
| Ebf1 | TH | Thalamus | 8.19 | |
| 6.4 | |